Strain Fitness in Shewanella loihica PV-4 around Shew_0375

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthslU and Shew_0375 are separated by 55 nucleotidesShew_0375 and Shew_0376 are separated by 594 nucleotides Shew_0374: hslU - ATP-dependent protease ATP-binding subunit (RefSeq), at 421,123 to 422,448 hslU Shew_0375: Shew_0375 - ATP-dependent protease peptidase subunit (RefSeq), at 422,504 to 423,028 _0375 Shew_0376: Shew_0376 - curlin-associated protein (RefSeq), at 423,623 to 425,317 _0376 Position (kb) 422 423 424Strain fitness (log2 ratio) -1 0 1at 421.559 kb on + strand, within hslUat 421.793 kb on - strand, within hslUat 422.142 kb on + strand, within hslUat 422.150 kb on - strand, within hslUat 422.748 kb on + strand, within Shew_0375at 423.158 kb on + strandat 423.412 kb on - strandat 423.541 kb on + strandat 423.572 kb on - strandat 423.742 kb on + strandat 423.862 kb on + strand, within Shew_0376

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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421,559 + hslU Shew_0374 0.33 -0.3
421,793 - hslU Shew_0374 0.51 +0.2
422,142 + hslU Shew_0374 0.77 -0.2
422,150 - hslU Shew_0374 0.77 -1.6
422,748 + Shew_0375 0.46 -0.6
423,158 + +0.1
423,412 - +0.2
423,541 + -0.1
423,572 - +0.1
423,742 + -0.2
423,862 + Shew_0376 0.14 -1.4

Or see this region's nucleotide sequence