Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0200 and Shew_0201 are separated by 117 nucleotides Shew_0201 and argC are separated by 273 nucleotides
Shew_0200: Shew_0200 - phosphoenolpyruvate carboxylase (RefSeq), at 211,110 to 213,746
_0200
Shew_0201: Shew_0201 - acetylornithine deacetylase (RefSeq), at 213,864 to 215,024
_0201
Shew_0202: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 215,298 to 216,278
argC
Position (kb) 213
214
215
216 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 212.875 kb on - strand, within Shew_0200 at 212.999 kb on + strand, within Shew_0200 at 213.116 kb on + strand, within Shew_0200 at 213.345 kb on - strand, within Shew_0200 at 213.616 kb on - strand at 213.671 kb on - strand at 213.965 kb on + strand at 213.965 kb on + strand at 213.965 kb on + strand at 213.973 kb on - strand at 214.079 kb on + strand, within Shew_0201 at 214.131 kb on + strand, within Shew_0201 at 214.134 kb on - strand, within Shew_0201 at 214.136 kb on + strand, within Shew_0201 at 214.139 kb on - strand, within Shew_0201 at 214.144 kb on - strand, within Shew_0201 at 214.164 kb on - strand, within Shew_0201 at 214.549 kb on + strand, within Shew_0201 at 214.549 kb on + strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.741 kb on - strand, within Shew_0201 at 215.553 kb on + strand, within argC at 215.606 kb on + strand, within argC at 215.772 kb on + strand, within argC
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 212,875 - Shew_0200 0.67 -3.3 212,999 + Shew_0200 0.72 -2.9 213,116 + Shew_0200 0.76 -0.7 213,345 - Shew_0200 0.85 -1.6 213,616 - -5.9 213,671 - -6.2 213,965 + -1.1 213,965 + -1.1 213,965 + -2.1 213,973 - +0.9 214,079 + Shew_0201 0.19 -2.2 214,131 + Shew_0201 0.23 -2.6 214,134 - Shew_0201 0.23 +1.3 214,136 + Shew_0201 0.23 -3.1 214,139 - Shew_0201 0.24 -0.3 214,144 - Shew_0201 0.24 -1.5 214,164 - Shew_0201 0.26 -0.0 214,549 + Shew_0201 0.59 -2.4 214,549 + Shew_0201 0.59 -1.8 214,557 - Shew_0201 0.60 -1.2 214,557 - Shew_0201 0.60 +0.2 214,557 - Shew_0201 0.60 -2.3 214,557 - Shew_0201 0.60 -1.5 214,557 - Shew_0201 0.60 -1.3 214,557 - Shew_0201 0.60 -2.6 214,741 - Shew_0201 0.76 -2.1 215,553 + argC Shew_0202 0.26 -2.8 215,606 + argC Shew_0202 0.31 -3.3 215,772 + argC Shew_0202 0.48 -4.4
Or see this region's nucleotide sequence