Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22315

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS22310 and RS_RS22315 are separated by 52 nucleotidesRS_RS22315 and RS_RS22320 are separated by 262 nucleotides RS_RS22310: RS_RS22310 - gfo/Idh/MocA family oxidoreductase, at 1,367,528 to 1,368,682 _RS22310 RS_RS22315: RS_RS22315 - hypothetical protein, at 1,368,735 to 1,369,031 _RS22315 RS_RS22320: RS_RS22320 - DUF2968 domain-containing protein, at 1,369,294 to 1,370,079 _RS22320 Position (kb) 1368 1369 1370Strain fitness (log2 ratio) -1 0 1at 1367.756 kb on + strand, within RS_RS22310at 1367.757 kb on - strand, within RS_RS22310at 1367.766 kb on - strand, within RS_RS22310at 1367.804 kb on + strand, within RS_RS22310at 1367.804 kb on + strand, within RS_RS22310at 1367.805 kb on - strand, within RS_RS22310at 1367.837 kb on + strand, within RS_RS22310at 1367.838 kb on - strand, within RS_RS22310at 1367.871 kb on + strand, within RS_RS22310at 1367.871 kb on + strand, within RS_RS22310at 1367.871 kb on + strand, within RS_RS22310at 1367.871 kb on + strand, within RS_RS22310at 1367.872 kb on - strand, within RS_RS22310at 1367.872 kb on - strand, within RS_RS22310at 1367.872 kb on - strand, within RS_RS22310at 1367.872 kb on - strand, within RS_RS22310at 1368.098 kb on + strand, within RS_RS22310at 1368.098 kb on + strand, within RS_RS22310at 1368.147 kb on + strand, within RS_RS22310at 1368.147 kb on + strand, within RS_RS22310at 1368.287 kb on + strand, within RS_RS22310at 1368.287 kb on + strand, within RS_RS22310at 1368.287 kb on + strand, within RS_RS22310at 1368.287 kb on + strand, within RS_RS22310at 1368.288 kb on - strand, within RS_RS22310at 1368.288 kb on - strand, within RS_RS22310at 1368.288 kb on - strand, within RS_RS22310at 1368.288 kb on - strand, within RS_RS22310at 1368.288 kb on - strand, within RS_RS22310at 1368.288 kb on - strand, within RS_RS22310at 1368.342 kb on - strand, within RS_RS22310at 1368.455 kb on + strand, within RS_RS22310at 1368.455 kb on + strand, within RS_RS22310at 1368.456 kb on - strand, within RS_RS22310at 1368.456 kb on - strand, within RS_RS22310at 1368.456 kb on - strand, within RS_RS22310at 1368.748 kb on + strandat 1368.956 kb on - strand, within RS_RS22315at 1368.956 kb on - strand, within RS_RS22315at 1368.967 kb on + strand, within RS_RS22315at 1369.120 kb on + strandat 1369.120 kb on + strandat 1369.121 kb on - strandat 1369.121 kb on - strandat 1369.121 kb on - strandat 1369.610 kb on + strand, within RS_RS22320at 1369.610 kb on + strand, within RS_RS22320at 1369.611 kb on - strand, within RS_RS22320at 1369.685 kb on + strand, within RS_RS22320at 1369.685 kb on + strand, within RS_RS22320at 1369.685 kb on + strand, within RS_RS22320at 1369.685 kb on + strand, within RS_RS22320at 1369.685 kb on + strand, within RS_RS22320at 1369.686 kb on - strand, within RS_RS22320at 1369.686 kb on - strand, within RS_RS22320at 1369.686 kb on - strand, within RS_RS22320at 1369.689 kb on - strand, within RS_RS22320at 1369.727 kb on + strand, within RS_RS22320at 1369.728 kb on - strand, within RS_RS22320at 1369.739 kb on + strand, within RS_RS22320at 1369.740 kb on - strand, within RS_RS22320

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,367,756 + RS_RS22310 0.20 -1.3
1,367,757 - RS_RS22310 0.20 -0.6
1,367,766 - RS_RS22310 0.21 -0.0
1,367,804 + RS_RS22310 0.24 +0.5
1,367,804 + RS_RS22310 0.24 -0.1
1,367,805 - RS_RS22310 0.24 -0.1
1,367,837 + RS_RS22310 0.27 -1.0
1,367,838 - RS_RS22310 0.27 -1.0
1,367,871 + RS_RS22310 0.30 -0.0
1,367,871 + RS_RS22310 0.30 -0.0
1,367,871 + RS_RS22310 0.30 +0.7
1,367,871 + RS_RS22310 0.30 -0.2
1,367,872 - RS_RS22310 0.30 +0.1
1,367,872 - RS_RS22310 0.30 +1.1
1,367,872 - RS_RS22310 0.30 -0.6
1,367,872 - RS_RS22310 0.30 -0.1
1,368,098 + RS_RS22310 0.49 +0.1
1,368,098 + RS_RS22310 0.49 -0.8
1,368,147 + RS_RS22310 0.54 +0.3
1,368,147 + RS_RS22310 0.54 -0.3
1,368,287 + RS_RS22310 0.66 -0.7
1,368,287 + RS_RS22310 0.66 -0.5
1,368,287 + RS_RS22310 0.66 -0.6
1,368,287 + RS_RS22310 0.66 +0.7
1,368,288 - RS_RS22310 0.66 -0.3
1,368,288 - RS_RS22310 0.66 +0.6
1,368,288 - RS_RS22310 0.66 -0.3
1,368,288 - RS_RS22310 0.66 -0.4
1,368,288 - RS_RS22310 0.66 -0.3
1,368,288 - RS_RS22310 0.66 -1.1
1,368,342 - RS_RS22310 0.70 -0.3
1,368,455 + RS_RS22310 0.80 +0.0
1,368,455 + RS_RS22310 0.80 -1.3
1,368,456 - RS_RS22310 0.80 -0.3
1,368,456 - RS_RS22310 0.80 +0.2
1,368,456 - RS_RS22310 0.80 -0.4
1,368,748 + +0.2
1,368,956 - RS_RS22315 0.74 +0.5
1,368,956 - RS_RS22315 0.74 -0.2
1,368,967 + RS_RS22315 0.78 +0.3
1,369,120 + +1.1
1,369,120 + -0.7
1,369,121 - +0.5
1,369,121 - +0.3
1,369,121 - -0.3
1,369,610 + RS_RS22320 0.40 +0.1
1,369,610 + RS_RS22320 0.40 -0.2
1,369,611 - RS_RS22320 0.40 -0.7
1,369,685 + RS_RS22320 0.50 -0.4
1,369,685 + RS_RS22320 0.50 +0.7
1,369,685 + RS_RS22320 0.50 +0.2
1,369,685 + RS_RS22320 0.50 +0.2
1,369,685 + RS_RS22320 0.50 +0.1
1,369,686 - RS_RS22320 0.50 +0.4
1,369,686 - RS_RS22320 0.50 -0.1
1,369,686 - RS_RS22320 0.50 +0.4
1,369,689 - RS_RS22320 0.50 -0.7
1,369,727 + RS_RS22320 0.55 -0.5
1,369,728 - RS_RS22320 0.55 -0.1
1,369,739 + RS_RS22320 0.57 +0.4
1,369,740 - RS_RS22320 0.57 -0.5

Or see this region's nucleotide sequence