Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17475 and RS_RS17480 are separated by 2 nucleotides RS_RS17480 and RS_RS17485 are separated by 4 nucleotides
RS_RS17475: RS_RS17475 - FAD-dependent oxidoreductase, at 65,014 to 67,077
_RS17475
RS_RS17480: RS_RS17480 - DUF3483 domain-containing protein, at 67,080 to 69,005
_RS17480
RS_RS17485: RS_RS17485 - electron transfer flavoprotein subunit alpha/FixB family protein, at 69,010 to 70,188
_RS17485
Position (kb) 67
68
69
70 Strain fitness (log2 ratio) -2
-1
0
1 at 66.089 kb on - strand, within RS_RS17475 at 66.563 kb on + strand, within RS_RS17475 at 66.564 kb on - strand, within RS_RS17475 at 66.715 kb on + strand, within RS_RS17475 at 66.745 kb on + strand, within RS_RS17475 at 66.745 kb on + strand, within RS_RS17475 at 66.746 kb on - strand, within RS_RS17475 at 66.746 kb on - strand, within RS_RS17475 at 66.763 kb on + strand, within RS_RS17475 at 66.763 kb on + strand, within RS_RS17475 at 66.764 kb on - strand, within RS_RS17475 at 66.881 kb on - strand at 67.045 kb on + strand at 67.162 kb on - strand at 67.233 kb on + strand at 67.272 kb on + strand at 67.273 kb on - strand, within RS_RS17480 at 67.342 kb on - strand, within RS_RS17480 at 67.357 kb on - strand, within RS_RS17480 at 67.386 kb on - strand, within RS_RS17480 at 67.782 kb on + strand, within RS_RS17480 at 67.783 kb on - strand, within RS_RS17480 at 67.982 kb on + strand, within RS_RS17480 at 68.241 kb on + strand, within RS_RS17480 at 68.346 kb on - strand, within RS_RS17480 at 68.392 kb on - strand, within RS_RS17480 at 68.508 kb on + strand, within RS_RS17480 at 68.509 kb on - strand, within RS_RS17480 at 68.509 kb on - strand, within RS_RS17480 at 68.607 kb on + strand, within RS_RS17480 at 68.682 kb on + strand, within RS_RS17480 at 68.697 kb on + strand, within RS_RS17480 at 68.709 kb on + strand, within RS_RS17480 at 68.710 kb on - strand, within RS_RS17480 at 69.054 kb on + strand at 69.441 kb on + strand, within RS_RS17485 at 69.441 kb on + strand, within RS_RS17485 at 69.490 kb on + strand, within RS_RS17485 at 69.559 kb on + strand, within RS_RS17485 at 69.559 kb on + strand, within RS_RS17485 at 69.559 kb on + strand, within RS_RS17485 at 69.559 kb on + strand, within RS_RS17485 at 69.560 kb on - strand, within RS_RS17485 at 69.560 kb on - strand, within RS_RS17485 at 69.560 kb on - strand, within RS_RS17485 at 69.805 kb on - strand, within RS_RS17485 at 69.937 kb on + strand, within RS_RS17485 at 69.951 kb on + strand, within RS_RS17485
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 66,089 - RS_RS17475 0.52 +0.3 66,563 + RS_RS17475 0.75 -0.0 66,564 - RS_RS17475 0.75 +0.1 66,715 + RS_RS17475 0.82 -0.0 66,745 + RS_RS17475 0.84 +0.2 66,745 + RS_RS17475 0.84 -1.6 66,746 - RS_RS17475 0.84 -0.1 66,746 - RS_RS17475 0.84 -0.4 66,763 + RS_RS17475 0.85 -0.0 66,763 + RS_RS17475 0.85 -1.9 66,764 - RS_RS17475 0.85 -0.0 66,881 - +0.1 67,045 + +0.2 67,162 - -0.2 67,233 + +0.3 67,272 + +0.5 67,273 - RS_RS17480 0.10 -1.4 67,342 - RS_RS17480 0.14 -0.6 67,357 - RS_RS17480 0.14 +0.3 67,386 - RS_RS17480 0.16 +0.1 67,782 + RS_RS17480 0.36 +1.0 67,783 - RS_RS17480 0.37 +0.1 67,982 + RS_RS17480 0.47 -0.2 68,241 + RS_RS17480 0.60 +0.5 68,346 - RS_RS17480 0.66 +0.1 68,392 - RS_RS17480 0.68 +0.9 68,508 + RS_RS17480 0.74 +0.1 68,509 - RS_RS17480 0.74 -0.3 68,509 - RS_RS17480 0.74 -0.2 68,607 + RS_RS17480 0.79 -0.0 68,682 + RS_RS17480 0.83 +0.3 68,697 + RS_RS17480 0.84 -0.2 68,709 + RS_RS17480 0.85 +0.0 68,710 - RS_RS17480 0.85 -0.0 69,054 + +0.1 69,441 + RS_RS17485 0.37 -0.5 69,441 + RS_RS17485 0.37 -0.1 69,490 + RS_RS17485 0.41 -0.0 69,559 + RS_RS17485 0.47 -1.0 69,559 + RS_RS17485 0.47 +0.3 69,559 + RS_RS17485 0.47 +0.6 69,559 + RS_RS17485 0.47 -0.1 69,560 - RS_RS17485 0.47 -0.5 69,560 - RS_RS17485 0.47 +0.4 69,560 - RS_RS17485 0.47 -0.9 69,805 - RS_RS17485 0.67 -0.8 69,937 + RS_RS17485 0.79 +0.2 69,951 + RS_RS17485 0.80 -0.1
Or see this region's nucleotide sequence