Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS09115

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS09110 and RS_RS09115 are separated by 216 nucleotidesRS_RS09115 and RS_RS09120 are separated by 273 nucleotides RS_RS09110: RS_RS09110 - thiazolinyl imide reductase, at 1,944,434 to 1,945,597 _RS09110 RS_RS09115: RS_RS09115 - hybrid non-ribosomal peptide synthetase/type I polyketide synthase, at 1,945,814 to 1,958,620 _RS09115 RS_RS09120: RS_RS09120 - TonB-dependent receptor, at 1,958,894 to 1,960,969 _RS09120 Position (kb) 1945 1946 1947 1948 1949 1950 1951 1952 1953 1954 1955 1956 1957 1958 1959Strain fitness (log2 ratio) -1 0 1at 1944.904 kb on - strand, within RS_RS09110at 1944.904 kb on - strand, within RS_RS09110at 1945.071 kb on + strand, within RS_RS09110at 1945.072 kb on - strand, within RS_RS09110at 1945.176 kb on + strand, within RS_RS09110at 1945.527 kb on + strandat 1945.527 kb on + strandat 1945.527 kb on + strandat 1945.566 kb on + strandat 1945.567 kb on - strandat 1945.815 kb on + strandat 1945.816 kb on - strandat 1946.373 kb on + strandat 1946.373 kb on + strandat 1946.374 kb on - strandat 1946.442 kb on + strandat 1946.800 kb on - strandat 1947.960 kb on + strand, within RS_RS09115at 1947.960 kb on + strand, within RS_RS09115at 1947.960 kb on + strand, within RS_RS09115at 1947.960 kb on + strand, within RS_RS09115at 1947.960 kb on + strand, within RS_RS09115at 1947.961 kb on - strand, within RS_RS09115at 1947.961 kb on - strand, within RS_RS09115at 1948.194 kb on + strand, within RS_RS09115at 1948.365 kb on + strand, within RS_RS09115at 1948.506 kb on + strand, within RS_RS09115at 1948.506 kb on + strand, within RS_RS09115at 1948.507 kb on - strand, within RS_RS09115at 1948.507 kb on - strand, within RS_RS09115at 1948.708 kb on - strand, within RS_RS09115at 1949.946 kb on + strand, within RS_RS09115at 1949.946 kb on + strand, within RS_RS09115at 1950.096 kb on + strand, within RS_RS09115at 1950.097 kb on - strand, within RS_RS09115at 1950.106 kb on - strand, within RS_RS09115at 1950.321 kb on + strand, within RS_RS09115at 1950.321 kb on + strand, within RS_RS09115at 1950.322 kb on - strand, within RS_RS09115at 1950.322 kb on - strand, within RS_RS09115at 1950.468 kb on + strand, within RS_RS09115at 1950.469 kb on - strand, within RS_RS09115at 1950.668 kb on + strand, within RS_RS09115at 1950.669 kb on - strand, within RS_RS09115at 1950.669 kb on - strand, within RS_RS09115at 1950.669 kb on - strand, within RS_RS09115at 1950.681 kb on + strand, within RS_RS09115at 1951.410 kb on + strand, within RS_RS09115at 1951.410 kb on + strand, within RS_RS09115at 1951.411 kb on - strand, within RS_RS09115at 1951.411 kb on - strand, within RS_RS09115at 1951.411 kb on - strand, within RS_RS09115at 1951.426 kb on - strand, within RS_RS09115at 1951.722 kb on + strand, within RS_RS09115at 1952.043 kb on + strand, within RS_RS09115at 1952.353 kb on - strand, within RS_RS09115at 1952.473 kb on - strand, within RS_RS09115at 1952.693 kb on - strand, within RS_RS09115at 1953.097 kb on - strand, within RS_RS09115at 1953.097 kb on - strand, within RS_RS09115at 1953.517 kb on - strand, within RS_RS09115at 1953.517 kb on - strand, within RS_RS09115at 1953.673 kb on - strand, within RS_RS09115at 1953.673 kb on - strand, within RS_RS09115at 1953.673 kb on - strand, within RS_RS09115at 1953.729 kb on + strand, within RS_RS09115at 1953.808 kb on - strand, within RS_RS09115at 1953.915 kb on + strand, within RS_RS09115at 1953.916 kb on - strand, within RS_RS09115at 1954.837 kb on - strand, within RS_RS09115at 1955.532 kb on + strand, within RS_RS09115at 1955.743 kb on - strand, within RS_RS09115at 1956.853 kb on + strand, within RS_RS09115at 1957.275 kb on + strand, within RS_RS09115at 1957.894 kb on - strandat 1957.912 kb on - strandat 1958.100 kb on + strandat 1958.100 kb on + strandat 1958.100 kb on + strandat 1958.100 kb on + strandat 1958.101 kb on - strandat 1958.101 kb on - strandat 1958.101 kb on - strandat 1958.101 kb on - strandat 1958.101 kb on - strandat 1958.101 kb on - strandat 1958.306 kb on + strandat 1958.364 kb on + strandat 1958.391 kb on + strandat 1958.391 kb on + strandat 1958.391 kb on + strandat 1958.648 kb on - strandat 1958.648 kb on - strandat 1958.759 kb on + strandat 1958.759 kb on + strandat 1958.853 kb on - strandat 1958.905 kb on + strandat 1958.906 kb on - strandat 1959.221 kb on + strand, within RS_RS09120at 1959.221 kb on + strand, within RS_RS09120at 1959.221 kb on + strand, within RS_RS09120at 1959.221 kb on + strand, within RS_RS09120at 1959.221 kb on + strand, within RS_RS09120at 1959.222 kb on - strand, within RS_RS09120at 1959.222 kb on - strand, within RS_RS09120at 1959.222 kb on - strand, within RS_RS09120at 1959.222 kb on - strand, within RS_RS09120at 1959.242 kb on + strand, within RS_RS09120at 1959.273 kb on - strand, within RS_RS09120at 1959.338 kb on + strand, within RS_RS09120at 1959.485 kb on + strand, within RS_RS09120at 1959.504 kb on - strand, within RS_RS09120

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,944,904 - RS_RS09110 0.40 -0.1
1,944,904 - RS_RS09110 0.40 -0.4
1,945,071 + RS_RS09110 0.55 +0.1
1,945,072 - RS_RS09110 0.55 +0.1
1,945,176 + RS_RS09110 0.64 +0.4
1,945,527 + +1.4
1,945,527 + +1.2
1,945,527 + +0.2
1,945,566 + +0.3
1,945,567 - +0.1
1,945,815 + +0.4
1,945,816 - -0.7
1,946,373 + -0.2
1,946,373 + -0.5
1,946,374 - -0.0
1,946,442 + -0.6
1,946,800 - -1.4
1,947,960 + RS_RS09115 0.17 +1.0
1,947,960 + RS_RS09115 0.17 +0.5
1,947,960 + RS_RS09115 0.17 -0.4
1,947,960 + RS_RS09115 0.17 +1.1
1,947,960 + RS_RS09115 0.17 -0.1
1,947,961 - RS_RS09115 0.17 -0.4
1,947,961 - RS_RS09115 0.17 +0.8
1,948,194 + RS_RS09115 0.19 +0.7
1,948,365 + RS_RS09115 0.20 +0.9
1,948,506 + RS_RS09115 0.21 +0.2
1,948,506 + RS_RS09115 0.21 +0.6
1,948,507 - RS_RS09115 0.21 +0.3
1,948,507 - RS_RS09115 0.21 +0.2
1,948,708 - RS_RS09115 0.23 -0.9
1,949,946 + RS_RS09115 0.32 -0.5
1,949,946 + RS_RS09115 0.32 +0.2
1,950,096 + RS_RS09115 0.33 +0.7
1,950,097 - RS_RS09115 0.33 +0.2
1,950,106 - RS_RS09115 0.34 +0.6
1,950,321 + RS_RS09115 0.35 +0.1
1,950,321 + RS_RS09115 0.35 -0.5
1,950,322 - RS_RS09115 0.35 -0.3
1,950,322 - RS_RS09115 0.35 +0.5
1,950,468 + RS_RS09115 0.36 +0.0
1,950,469 - RS_RS09115 0.36 +0.1
1,950,668 + RS_RS09115 0.38 +0.4
1,950,669 - RS_RS09115 0.38 +0.1
1,950,669 - RS_RS09115 0.38 +0.2
1,950,669 - RS_RS09115 0.38 -0.0
1,950,681 + RS_RS09115 0.38 +0.4
1,951,410 + RS_RS09115 0.44 -0.1
1,951,410 + RS_RS09115 0.44 +0.4
1,951,411 - RS_RS09115 0.44 +0.5
1,951,411 - RS_RS09115 0.44 -0.1
1,951,411 - RS_RS09115 0.44 +0.5
1,951,426 - RS_RS09115 0.44 +0.8
1,951,722 + RS_RS09115 0.46 +0.4
1,952,043 + RS_RS09115 0.49 +0.3
1,952,353 - RS_RS09115 0.51 +0.4
1,952,473 - RS_RS09115 0.52 +0.4
1,952,693 - RS_RS09115 0.54 +0.8
1,953,097 - RS_RS09115 0.57 +0.7
1,953,097 - RS_RS09115 0.57 -0.5
1,953,517 - RS_RS09115 0.60 +0.1
1,953,517 - RS_RS09115 0.60 -0.7
1,953,673 - RS_RS09115 0.61 +0.3
1,953,673 - RS_RS09115 0.61 +0.4
1,953,673 - RS_RS09115 0.61 -0.8
1,953,729 + RS_RS09115 0.62 +0.4
1,953,808 - RS_RS09115 0.62 +0.7
1,953,915 + RS_RS09115 0.63 -1.3
1,953,916 - RS_RS09115 0.63 -0.4
1,954,837 - RS_RS09115 0.70 +0.8
1,955,532 + RS_RS09115 0.76 -0.1
1,955,743 - RS_RS09115 0.78 +0.3
1,956,853 + RS_RS09115 0.86 +0.8
1,957,275 + RS_RS09115 0.89 -0.0
1,957,894 - -0.4
1,957,912 - +0.2
1,958,100 + +0.0
1,958,100 + -0.0
1,958,100 + +0.6
1,958,100 + +1.0
1,958,101 - +0.8
1,958,101 - +0.1
1,958,101 - +0.3
1,958,101 - -0.3
1,958,101 - +0.8
1,958,101 - +0.3
1,958,306 + +0.0
1,958,364 + +0.0
1,958,391 + +0.2
1,958,391 + +0.5
1,958,391 + +0.3
1,958,648 - +0.3
1,958,648 - +0.5
1,958,759 + -0.2
1,958,759 + -0.6
1,958,853 - +0.0
1,958,905 + +0.7
1,958,906 - +1.1
1,959,221 + RS_RS09120 0.16 -0.1
1,959,221 + RS_RS09120 0.16 +1.0
1,959,221 + RS_RS09120 0.16 +0.4
1,959,221 + RS_RS09120 0.16 +0.3
1,959,221 + RS_RS09120 0.16 +0.2
1,959,222 - RS_RS09120 0.16 -0.1
1,959,222 - RS_RS09120 0.16 -0.1
1,959,222 - RS_RS09120 0.16 +1.3
1,959,222 - RS_RS09120 0.16 +0.4
1,959,242 + RS_RS09120 0.17 -0.6
1,959,273 - RS_RS09120 0.18 +1.3
1,959,338 + RS_RS09120 0.21 +0.0
1,959,485 + RS_RS09120 0.28 +0.2
1,959,504 - RS_RS09120 0.29 +0.9

Or see this region's nucleotide sequence