Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS21575

Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS21565 and RALBFv3_RS21570 are separated by 20 nucleotidesRALBFv3_RS21570 and RALBFv3_RS21575 are separated by 93 nucleotidesRALBFv3_RS21575 and RALBFv3_RS21580 overlap by 11 nucleotidesRALBFv3_RS21580 and RALBFv3_RS21585 are separated by 35 nucleotides RALBFv3_RS21565: RALBFv3_RS21565 - flagellar hook-length control protein FliK, at 1,567,489 to 1,569,060 _RS21565 RALBFv3_RS21570: RALBFv3_RS21570 - flagellar export protein FliJ, at 1,569,081 to 1,569,545 _RS21570 RALBFv3_RS21575: RALBFv3_RS21575 - flagellum-specific ATP synthase FliI, at 1,569,639 to 1,571,084 _RS21575 RALBFv3_RS21580: RALBFv3_RS21580 - flagellar assembly protein FliH, at 1,571,074 to 1,571,820 _RS21580 RALBFv3_RS21585: RALBFv3_RS21585 - flagellar motor switch protein FliG, at 1,571,856 to 1,572,848 _RS21585 Position (kb) 1569 1570 1571 1572Strain fitness (log2 ratio) -1 0 1 2at 1568.874 kb on + strand, within RALBFv3_RS21565at 1568.874 kb on + strand, within RALBFv3_RS21565at 1568.874 kb on + strand, within RALBFv3_RS21565at 1568.875 kb on - strand, within RALBFv3_RS21565at 1568.952 kb on + strandat 1569.334 kb on + strand, within RALBFv3_RS21570at 1569.334 kb on + strand, within RALBFv3_RS21570at 1569.334 kb on + strand, within RALBFv3_RS21570at 1569.335 kb on - strand, within RALBFv3_RS21570at 1569.335 kb on - strand, within RALBFv3_RS21570at 1569.335 kb on - strand, within RALBFv3_RS21570at 1569.335 kb on - strand, within RALBFv3_RS21570at 1569.335 kb on - strand, within RALBFv3_RS21570at 1569.395 kb on - strand, within RALBFv3_RS21570at 1569.407 kb on - strand, within RALBFv3_RS21570at 1569.407 kb on - strand, within RALBFv3_RS21570at 1569.407 kb on - strand, within RALBFv3_RS21570at 1569.407 kb on - strand, within RALBFv3_RS21570at 1569.407 kb on - strand, within RALBFv3_RS21570at 1569.495 kb on - strand, within RALBFv3_RS21570at 1569.603 kb on - strandat 1569.812 kb on - strand, within RALBFv3_RS21575at 1569.820 kb on + strand, within RALBFv3_RS21575at 1569.820 kb on + strand, within RALBFv3_RS21575at 1569.820 kb on + strand, within RALBFv3_RS21575at 1569.821 kb on - strand, within RALBFv3_RS21575at 1569.821 kb on - strand, within RALBFv3_RS21575at 1570.027 kb on + strand, within RALBFv3_RS21575at 1570.028 kb on - strand, within RALBFv3_RS21575at 1570.028 kb on - strand, within RALBFv3_RS21575at 1570.028 kb on - strand, within RALBFv3_RS21575at 1570.870 kb on - strand, within RALBFv3_RS21575at 1571.512 kb on - strand, within RALBFv3_RS21580at 1571.790 kb on + strandat 1571.863 kb on + strandat 1571.863 kb on + strandat 1571.863 kb on + strandat 1571.864 kb on - strandat 1571.864 kb on - strandat 1571.864 kb on - strandat 1571.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,568,874 + RALBFv3_RS21565 0.88 +1.0
1,568,874 + RALBFv3_RS21565 0.88 -0.9
1,568,874 + RALBFv3_RS21565 0.88 +0.1
1,568,875 - RALBFv3_RS21565 0.88 -0.1
1,568,952 + +0.8
1,569,334 + RALBFv3_RS21570 0.54 +0.8
1,569,334 + RALBFv3_RS21570 0.54 -0.2
1,569,334 + RALBFv3_RS21570 0.54 +1.1
1,569,335 - RALBFv3_RS21570 0.55 -1.1
1,569,335 - RALBFv3_RS21570 0.55 +2.3
1,569,335 - RALBFv3_RS21570 0.55 +1.6
1,569,335 - RALBFv3_RS21570 0.55 -0.2
1,569,335 - RALBFv3_RS21570 0.55 -0.5
1,569,395 - RALBFv3_RS21570 0.68 +1.1
1,569,407 - RALBFv3_RS21570 0.70 -0.5
1,569,407 - RALBFv3_RS21570 0.70 +0.3
1,569,407 - RALBFv3_RS21570 0.70 -0.6
1,569,407 - RALBFv3_RS21570 0.70 +0.1
1,569,407 - RALBFv3_RS21570 0.70 +1.9
1,569,495 - RALBFv3_RS21570 0.89 -0.5
1,569,603 - +0.1
1,569,812 - RALBFv3_RS21575 0.12 +1.3
1,569,820 + RALBFv3_RS21575 0.13 -0.2
1,569,820 + RALBFv3_RS21575 0.13 +1.1
1,569,820 + RALBFv3_RS21575 0.13 -1.1
1,569,821 - RALBFv3_RS21575 0.13 -0.1
1,569,821 - RALBFv3_RS21575 0.13 +1.8
1,570,027 + RALBFv3_RS21575 0.27 +0.6
1,570,028 - RALBFv3_RS21575 0.27 -0.7
1,570,028 - RALBFv3_RS21575 0.27 -0.2
1,570,028 - RALBFv3_RS21575 0.27 +0.7
1,570,870 - RALBFv3_RS21575 0.85 -0.9
1,571,512 - RALBFv3_RS21580 0.59 +0.9
1,571,790 + -0.5
1,571,863 + -0.6
1,571,863 + +0.5
1,571,863 + -1.3
1,571,864 - -0.3
1,571,864 - -0.7
1,571,864 - -0.8
1,571,864 - -0.2

Or see this region's nucleotide sequence