Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06930

Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06925 and RALBFv3_RS06930 are separated by 151 nucleotidesRALBFv3_RS06930 and RALBFv3_RS06935 are separated by 18 nucleotides RALBFv3_RS06925: RALBFv3_RS06925 - OmpW family protein, at 1,537,327 to 1,538,001 _RS06925 RALBFv3_RS06930: RALBFv3_RS06930 - deoxyguanosinetriphosphate triphosphohydrolase, at 1,538,153 to 1,539,316 _RS06930 RALBFv3_RS06935: RALBFv3_RS06935 - 3-dehydroquinate synthase, at 1,539,335 to 1,540,441 _RS06935 Position (kb) 1538 1539 1540Strain fitness (log2 ratio) -1 0 1at 1537.187 kb on + strandat 1537.557 kb on + strand, within RALBFv3_RS06925at 1537.739 kb on - strand, within RALBFv3_RS06925at 1537.759 kb on + strand, within RALBFv3_RS06925at 1537.759 kb on + strand, within RALBFv3_RS06925at 1537.760 kb on - strand, within RALBFv3_RS06925at 1537.879 kb on + strand, within RALBFv3_RS06925at 1537.980 kb on - strandat 1538.362 kb on - strand, within RALBFv3_RS06930

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,537,187 + +0.1
1,537,557 + RALBFv3_RS06925 0.34 +0.2
1,537,739 - RALBFv3_RS06925 0.61 +0.2
1,537,759 + RALBFv3_RS06925 0.64 +0.6
1,537,759 + RALBFv3_RS06925 0.64 -0.9
1,537,760 - RALBFv3_RS06925 0.64 -0.3
1,537,879 + RALBFv3_RS06925 0.82 +0.2
1,537,980 - -1.6
1,538,362 - RALBFv3_RS06930 0.18 -0.8

Or see this region's nucleotide sequence