Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11395

Experiment: R2A with Manganese (II) chloride tetrahydrate 6.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 6.25 mM
2,523,812	+				+0.7
2,523,812	+				+1.0
2,523,812	+				+1.4
2,523,812	+				+0.2
2,523,812	+				+1.4
2,523,813	-				+1.3
2,523,813	-				+0.3
2,523,813	-				+0.1
2,523,813	-				+0.8
2,523,969	+				+2.2
2,523,969	+				+2.8
2,523,969	+				+2.4
2,523,970	-				+1.3
2,523,970	-				+1.6
2,523,970	-				+2.0
2,523,970	-				+1.7
2,523,970	-				+0.1
2,523,970	-				+0.1
2,523,970	-				-0.1
2,523,970	-				+2.7
2,523,970	-				+1.6
2,524,117	+				+0.4
2,524,117	+				-0.1
2,524,117	+				-1.2
2,524,117	+				+0.8
2,524,117	+				+2.3
2,524,117	+				-0.5
2,524,117	+				+0.9
2,524,117	+				+0.3
2,524,117	+				+0.2
2,524,117	+				-0.4
2,524,117	+				-0.2
2,524,117	+				+0.1
2,524,117	+				-0.1
2,524,118	-				-0.4
2,524,118	-				+0.8
2,524,118	-				+1.9
2,524,118	-				-0.5
2,524,118	-				-0.0
2,524,118	-				-1.4
2,524,118	-				-1.0
2,524,118	-				+0.4
2,524,118	-				+0.4
2,524,118	-				-1.2
2,524,118	-				+1.9
2,524,464	+				+1.4
2,524,465	-				-1.0
2,524,502	+				+0.1
2,524,502	+				+0.2
2,524,502	+				+0.0
2,524,503	-				-3.0
2,524,503	-				-2.7
2,524,503	-				+0.7
2,524,517	+				-2.2
2,524,517	+				-1.9
2,524,517	+				+0.5
2,524,517	+				-0.3
2,524,517	+				-3.0
2,524,517	+				-0.1
2,524,517	+				-1.6
2,524,517	+				-0.9
2,524,517	+				-1.7
2,524,517	+				+1.8
2,524,517	+				-1.9
2,524,517	+				-2.2
2,524,518	-				-0.2
2,524,518	-				-0.4
2,524,518	-				-0.2
2,524,518	-				-0.2
2,524,603	+				-1.6
2,524,603	+				-0.1
2,524,603	+				-0.4
2,524,603	+				+0.3
2,524,603	+				-0.6
2,524,603	+				-1.3
2,524,603	+				-2.2
2,524,603	+				-0.3
2,524,603	+				-0.8
2,524,603	+				+1.4
2,524,603	+				-1.7
2,524,603	+				+0.4
2,524,603	+				-2.2
2,524,603	+				-0.8
2,524,603	+				-0.8
2,524,603	+				+0.8
2,524,603	+				-2.2
2,524,603	+				-1.7
2,524,603	+				+0.1
2,524,603	+				-1.8
2,524,604	-				-1.6
2,524,604	-				-0.7
2,524,604	-				-2.5
2,524,604	-				+1.4
2,524,604	-				-1.7
2,524,604	-				-0.6
2,524,604	-				-1.0
2,524,604	-				+1.8
2,524,604	-				+2.4
2,524,604	-				-1.0
2,524,604	-				-2.0
2,524,604	-				-1.6
2,524,604	-				-0.5
2,524,604	-				-2.1
2,524,604	-				-2.5
2,524,604	-				-2.3
2,524,604	-				+0.4
2,524,604	-				+1.4
2,524,604	-				-2.9
2,524,604	-				+0.6
2,524,604	-				-0.4
2,524,604	-				-0.2
2,524,630	+		LRK54_RS11395	0.11	-1.1
2,524,645	+		LRK54_RS11395	0.13	-0.6
2,524,646	-		LRK54_RS11395	0.14	-2.2
2,524,855	+		LRK54_RS11395	0.44	-1.7
2,524,855	+		LRK54_RS11395	0.44	-2.3
2,524,855	+		LRK54_RS11395	0.44	+1.2
2,524,855	+		LRK54_RS11395	0.44	-1.2
2,524,855	+		LRK54_RS11395	0.44	-1.9
2,524,855	+		LRK54_RS11395	0.44	-0.8
2,524,855	+		LRK54_RS11395	0.44	-0.2
2,524,855	+		LRK54_RS11395	0.44	-0.6
2,524,855	+		LRK54_RS11395	0.44	+0.6
2,524,855	+		LRK54_RS11395	0.44	-1.7
2,524,855	+		LRK54_RS11395	0.44	+1.4
2,524,856	-		LRK54_RS11395	0.44	-0.5
2,524,856	-		LRK54_RS11395	0.44	-0.7
2,524,856	-		LRK54_RS11395	0.44	-0.9
2,524,856	-		LRK54_RS11395	0.44	-1.2
2,524,856	-		LRK54_RS11395	0.44	-3.1
2,524,856	-		LRK54_RS11395	0.44	-2.4
2,524,856	-		LRK54_RS11395	0.44	-0.3
2,524,856	-		LRK54_RS11395	0.44	-2.1
2,525,406	+		LRK54_RS11400	0.29	+0.6
2,525,406	+		LRK54_RS11400	0.29	-0.6
2,525,406	+		LRK54_RS11400	0.29	+2.4
2,525,406	+		LRK54_RS11400	0.29	-0.3
2,525,406	+		LRK54_RS11400	0.29	-0.5
2,525,406	+		LRK54_RS11400	0.29	+0.1
2,525,406	+		LRK54_RS11400	0.29	-0.6
2,525,406	+		LRK54_RS11400	0.29	-1.1
2,525,406	+		LRK54_RS11400	0.29	+0.8
2,525,406	+		LRK54_RS11400	0.29	-0.5
2,525,406	+		LRK54_RS11400	0.29	-1.5
2,525,406	+		LRK54_RS11400	0.29	-0.6
2,525,406	+		LRK54_RS11400	0.29	-0.5
2,525,406	+		LRK54_RS11400	0.29	-0.1
2,525,406	+		LRK54_RS11400	0.29	+0.0
2,525,406	+		LRK54_RS11400	0.29	-1.6
2,525,406	+		LRK54_RS11400	0.29	+0.9
2,525,406	+		LRK54_RS11400	0.29	-1.0
2,525,406	+		LRK54_RS11400	0.29	-0.6
2,525,406	+		LRK54_RS11400	0.29	+0.2
2,525,406	+		LRK54_RS11400	0.29	+0.6
2,525,406	+		LRK54_RS11400	0.29	-0.3
2,525,406	+		LRK54_RS11400	0.29	-0.9
2,525,406	+		LRK54_RS11400	0.29	+1.0
2,525,406	+		LRK54_RS11400	0.29	+0.7
2,525,406	+		LRK54_RS11400	0.29	-1.0
2,525,406	+		LRK54_RS11400	0.29	-0.6
2,525,407	-		LRK54_RS11400	0.29	-1.5
2,525,407	-		LRK54_RS11400	0.29	+0.6
2,525,407	-		LRK54_RS11400	0.29	+0.4
2,525,407	-		LRK54_RS11400	0.29	+0.9
2,525,407	-		LRK54_RS11400	0.29	-1.4
2,525,407	-		LRK54_RS11400	0.29	-0.2
2,525,407	-		LRK54_RS11400	0.29	-0.5
2,525,407	-		LRK54_RS11400	0.29	+0.4
2,525,407	-		LRK54_RS11400	0.29	-0.1
2,525,407	-		LRK54_RS11400	0.29	-0.3
2,525,407	-		LRK54_RS11400	0.29	-0.8
2,525,407	-		LRK54_RS11400	0.29	+0.2
2,525,407	-		LRK54_RS11400	0.29	-3.0
2,525,407	-		LRK54_RS11400	0.29	+0.9
2,525,407	-		LRK54_RS11400	0.29	+0.7
2,525,407	-		LRK54_RS11400	0.29	+0.3
2,525,407	-		LRK54_RS11400	0.29	+1.3
2,525,407	-		LRK54_RS11400	0.29	+0.1
2,525,407	-		LRK54_RS11400	0.29	-2.3
2,525,407	-		LRK54_RS11400	0.29	-1.0
2,525,407	-		LRK54_RS11400	0.29	+0.4
2,525,407	-		LRK54_RS11400	0.29	+0.4
2,525,407	-		LRK54_RS11400	0.29	-1.3
2,525,407	-		LRK54_RS11400	0.29	+0.1
2,525,407	-		LRK54_RS11400	0.29	+0.1
2,525,439	+		LRK54_RS11400	0.35	+1.0
2,525,439	+		LRK54_RS11400	0.35	-0.1
2,525,439	+		LRK54_RS11400	0.35	-0.7
2,525,439	+		LRK54_RS11400	0.35	+0.7
2,525,439	+		LRK54_RS11400	0.35	-2.2
2,525,439	+		LRK54_RS11400	0.35	-1.7
2,525,439	+		LRK54_RS11400	0.35	-0.8
2,525,440	-		LRK54_RS11400	0.35	-0.7
2,525,440	-		LRK54_RS11400	0.35	+0.5
2,525,440	-		LRK54_RS11400	0.35	-0.2
2,525,544	+		LRK54_RS11400	0.53	-0.6
2,525,544	+		LRK54_RS11400	0.53	-0.7
2,525,573	-		LRK54_RS11400	0.58	-0.9
2,525,622	+		LRK54_RS11400	0.66	+0.6
2,525,622	+		LRK54_RS11400	0.66	-0.7
2,525,623	-		LRK54_RS11400	0.66	-0.2
2,525,623	-		LRK54_RS11400	0.66	+2.0
2,525,623	-		LRK54_RS11400	0.66	-1.9
2,525,623	-		LRK54_RS11400	0.66	-0.1
2,525,623	-		LRK54_RS11400	0.66	-0.4
2,525,623	-		LRK54_RS11400	0.66	-1.7
2,525,623	-		LRK54_RS11400	0.66	+0.4
2,525,623	-		LRK54_RS11400	0.66	-1.3
2,525,679	-		LRK54_RS11400	0.76	-0.9
2,525,679	-		LRK54_RS11400	0.76	-0.4
2,525,901	+				-1.5
2,525,901	+				+0.8
2,525,901	+				+0.9
2,525,901	+				-2.0
2,525,901	+				-2.0
2,525,901	+				-1.4
2,525,902	-				-0.7
2,525,902	-				+0.4
2,525,902	-				+0.3
2,525,902	-				+0.6
2,525,902	-				-0.3
2,525,902	-				-1.0
2,525,902	-				+0.0
2,525,902	-				-0.1
2,525,902	-				-0.7
2,525,902	-				-1.4
2,525,902	-				-1.0
2,525,902	-				+0.7
2,525,902	-				-1.5
2,525,902	-				-0.6
2,525,902	-				+2.4
2,525,902	-				+0.1
2,526,027	+				+0.0
2,526,027	+				-0.2
2,526,027	+				-1.0
2,526,027	+				-0.9
2,526,027	+				-1.1
2,526,027	+				-0.5
2,526,027	+				+0.7
2,526,027	+				-1.1
2,526,027	+				-1.6
2,526,028	-				-0.7
2,526,028	-				-0.1
2,526,028	-				+0.1
2,526,028	-				-1.0
2,526,028	-				-2.1
2,526,028	-				+1.9
2,526,028	-				+0.4
2,526,028	-				-0.3
2,526,028	-				-0.6
2,526,028	-				-2.0
2,526,028	-				-2.1
2,526,067	-		LRK54_RS11405	0.12	-1.4
2,526,162	+		LRK54_RS11405	0.16	+0.4
2,526,162	+		LRK54_RS11405	0.16	-0.8
2,526,162	+		LRK54_RS11405	0.16	-1.9
2,526,162	+		LRK54_RS11405	0.16	-1.4
2,526,163	-		LRK54_RS11405	0.16	-0.7
2,526,163	-		LRK54_RS11405	0.16	-0.7