Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03235

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
3,398,819	+		CCNA_03233	0.84	-1.6
3,398,822	-		CCNA_03233	0.84	-0.4
3,398,848	-		CCNA_03233	0.86	-1.8
3,398,855	+		CCNA_03233	0.86	-0.1
3,398,855	+		CCNA_03233	0.86	-1.9
3,398,855	+		CCNA_03233	0.86	-2.7
3,398,855	+		CCNA_03233	0.86	+0.3
3,398,855	+		CCNA_03233	0.86	+0.3
3,398,855	+		CCNA_03233	0.86	-0.1
3,398,855	+		CCNA_03233	0.86	-1.3
3,398,855	+		CCNA_03233	0.86	+0.7
3,398,863	-		CCNA_03233	0.87	-3.3
3,398,863	-		CCNA_03233	0.87	-2.1
3,398,863	-		CCNA_03233	0.87	-2.9
3,398,863	-		CCNA_03233	0.87	-2.2
3,398,863	-		CCNA_03233	0.87	-1.3
3,398,924	+				-1.7
3,398,947	+				-1.1
3,398,979	+				-1.3
3,398,984	+				-2.5
3,398,995	+				-1.6
3,399,003	+				+0.9
3,399,054	+				-2.1
3,399,061	+				-0.7
3,399,061	+				-0.1
3,399,069	-				-1.4
3,399,073	+				-0.7
3,399,091	-				-1.4
3,399,145	+		CCNA_03234	0.11	-1.4
3,399,157	+		CCNA_03234	0.12	-1.6
3,399,244	+		CCNA_03234	0.24	+0.3
3,399,244	-		CCNA_03234	0.24	-2.5
3,399,248	+		CCNA_03234	0.25	+0.8
3,399,253	-		CCNA_03234	0.25	-2.7
3,399,266	+		CCNA_03234	0.27	-2.1
3,399,274	-		CCNA_03234	0.28	-2.3
3,399,274	-		CCNA_03234	0.28	+0.0
3,399,276	-		CCNA_03234	0.28	-1.8
3,399,303	-		CCNA_03234	0.32	-0.9
3,399,311	-		CCNA_03234	0.33	-0.2
3,399,316	+		CCNA_03234	0.34	-1.9
3,399,324	-		CCNA_03234	0.35	-0.5
3,399,324	-		CCNA_03234	0.35	-1.3
3,399,324	-		CCNA_03234	0.35	-1.3
3,399,324	-		CCNA_03234	0.35	-1.4
3,399,326	-		CCNA_03234	0.35	+0.3
3,399,382	+		CCNA_03234	0.42	-0.8
3,399,390	-		CCNA_03234	0.43	-1.1
3,399,408	+		CCNA_03234	0.46	+1.9
3,399,416	-		CCNA_03234	0.47	-0.9
3,399,455	+		CCNA_03234	0.52	-2.3
3,399,472	+		CCNA_03234	0.54	-2.3
3,399,499	+		CCNA_03234	0.58	+2.5
3,399,504	+		CCNA_03234	0.59	-0.4
3,399,515	+		CCNA_03234	0.60	-2.3
3,399,515	+		CCNA_03234	0.60	-0.9
3,399,515	+		CCNA_03234	0.60	+1.9
3,399,518	-		CCNA_03234	0.61	-2.2
3,399,523	-		CCNA_03234	0.61	-2.3
3,399,523	-		CCNA_03234	0.61	+0.1
3,399,551	+		CCNA_03234	0.65	-2.4
3,399,614	-		CCNA_03234	0.73	-3.0
3,399,627	+		CCNA_03234	0.75	-3.2
3,399,627	+		CCNA_03234	0.75	-1.6
3,399,635	-		CCNA_03234	0.76	-2.0
3,399,635	-		CCNA_03234	0.76	-1.4
3,399,635	-		CCNA_03234	0.76	+1.5
3,399,674	-		CCNA_03234	0.81	-1.3
3,399,688	+		CCNA_03234	0.83	-3.0
3,399,696	-		CCNA_03234	0.84	-1.4
3,399,723	-		CCNA_03234	0.88	-1.3
3,399,723	-		CCNA_03234	0.88	+0.5
3,399,749	+				-2.0
3,399,749	+				-0.7
3,399,781	-				-2.0
3,399,790	-				-0.2
3,399,808	+				-1.1
3,399,822	-				-0.2
3,399,832	-				-2.7
3,399,832	-				-1.0
3,399,832	-				-0.9
3,399,834	-				-2.4
3,399,857	-				-0.9
3,399,867	+				-3.8
3,399,867	+				-1.7
3,399,877	+				-0.4
3,399,877	+				-1.3
3,399,877	+				+0.3
3,399,884	+				-1.3
3,399,885	-				-0.4
3,399,885	-				-1.3
3,399,885	-				+0.3
3,399,930	-				-1.9
3,399,952	-		CCNA_03235	0.12	-2.1
3,399,993	+		CCNA_03235	0.15	-2.1
3,400,001	-		CCNA_03235	0.16	-1.7
3,400,003	+		CCNA_03235	0.16	-1.7
3,400,021	-		CCNA_03235	0.18	-0.4
3,400,049	+		CCNA_03235	0.20	-1.6
3,400,067	-		CCNA_03235	0.22	-2.0
3,400,095	+		CCNA_03235	0.24	-1.6
3,400,142	+		CCNA_03235	0.28	-0.7
3,400,182	-		CCNA_03235	0.32	+1.9
3,400,206	+		CCNA_03235	0.34	-1.7
3,400,227	+		CCNA_03235	0.36	+0.9
3,400,263	+		CCNA_03235	0.39	-2.5
3,400,264	+		CCNA_03235	0.39	+0.3
3,400,294	+		CCNA_03235	0.42	-2.0
3,400,310	-		CCNA_03235	0.43	-0.9
3,400,315	-		CCNA_03235	0.43	-2.9
3,400,315	-		CCNA_03235	0.43	-1.7
3,400,328	+		CCNA_03235	0.45	-0.7
3,400,342	-		CCNA_03235	0.46	-0.1
3,400,349	-		CCNA_03235	0.46	-2.2
3,400,349	-		CCNA_03235	0.46	-1.3
3,400,359	-		CCNA_03235	0.47	-2.7
3,400,374	-		CCNA_03235	0.49	-0.9
3,400,380	-		CCNA_03235	0.49	-0.4
3,400,398	+		CCNA_03235	0.51	+0.3
3,400,398	+		CCNA_03235	0.51	-2.1
3,400,398	+		CCNA_03235	0.51	-0.9
3,400,398	+		CCNA_03235	0.51	-2.6
3,400,398	+		CCNA_03235	0.51	-1.4
3,400,400	+		CCNA_03235	0.51	-2.5
3,400,406	-		CCNA_03235	0.51	-1.6
3,400,406	-		CCNA_03235	0.51	-2.3
3,400,406	-		CCNA_03235	0.51	-0.9
3,400,406	-		CCNA_03235	0.51	-2.1
3,400,406	-		CCNA_03235	0.51	-1.7
3,400,406	-		CCNA_03235	0.51	-3.7
3,400,406	-		CCNA_03235	0.51	-2.8
3,400,410	+		CCNA_03235	0.52	-1.0
3,400,437	-		CCNA_03235	0.54	-1.4
3,400,457	+		CCNA_03235	0.56	-1.3
3,400,458	+		CCNA_03235	0.56	-1.1
3,400,468	+		CCNA_03235	0.57	-0.9
3,400,487	-		CCNA_03235	0.58	-2.7
3,400,487	-		CCNA_03235	0.58	-2.2
3,400,489	+		CCNA_03235	0.59	-2.8
3,400,489	+		CCNA_03235	0.59	-2.7
3,400,532	-		CCNA_03235	0.62	-0.1
3,400,534	+		CCNA_03235	0.62	-2.6
3,400,539	+		CCNA_03235	0.63	-2.7
3,400,539	+		CCNA_03235	0.63	-2.6
3,400,539	+		CCNA_03235	0.63	-0.7
3,400,542	-		CCNA_03235	0.63	-2.1
3,400,547	-		CCNA_03235	0.64	-1.4
3,400,547	-		CCNA_03235	0.64	-2.4
3,400,574	+		CCNA_03235	0.66	-1.3
3,400,580	-		CCNA_03235	0.66	-1.8
3,400,608	+		CCNA_03235	0.69	-0.4
3,400,616	-		CCNA_03235	0.70	-2.3
3,400,616	-		CCNA_03235	0.70	-2.6
3,400,659	+		CCNA_03235	0.73	-2.6
3,400,675	+		CCNA_03235	0.75	-1.1
3,400,677	+		CCNA_03235	0.75	-3.1
3,400,683	-		CCNA_03235	0.75	-1.2
3,400,683	-		CCNA_03235	0.75	-2.1
3,400,693	-		CCNA_03235	0.76	-2.4
3,400,720	+		CCNA_03235	0.79	-1.4
3,400,733	+		CCNA_03235	0.80	-3.1
3,400,736	-		CCNA_03235	0.80	-1.1
3,400,756	+		CCNA_03235	0.82	-1.3
3,400,821	+		CCNA_03235	0.88	-2.5
3,400,829	-		CCNA_03235	0.88	-1.6
3,400,868	+				-3.2
3,400,876	-				-1.1
3,400,909	+				-1.1
3,400,967	+				-0.9
3,400,975	+				-2.3
3,401,037	+				-0.4
3,401,037	+				+0.1
3,401,039	+				-0.8
3,401,060	+				-1.7
3,401,105	-				+1.9
3,401,128	-				-1.3
3,401,198	-		CCNA_03236	0.10	-2.4
3,401,199	+		CCNA_03236	0.10	-1.3
3,401,218	+		CCNA_03236	0.12	-2.1
3,401,225	+		CCNA_03236	0.13	-1.1
3,401,257	-		CCNA_03236	0.17	-2.0
3,401,275	+		CCNA_03236	0.19	-2.6
3,401,275	-		CCNA_03236	0.19	-0.9
3,401,282	-		CCNA_03236	0.20	-1.8
3,401,283	+		CCNA_03236	0.20	+0.6
3,401,283	+		CCNA_03236	0.20	-0.7
3,401,283	+		CCNA_03236	0.20	-2.0
3,401,283	-		CCNA_03236	0.20	-0.9
3,401,291	-		CCNA_03236	0.21	-2.0
3,401,291	-		CCNA_03236	0.21	-0.4
3,401,291	-		CCNA_03236	0.21	+0.3
3,401,296	-		CCNA_03236	0.21	-1.8
3,401,312	-		CCNA_03236	0.23	-2.3
3,401,332	-		CCNA_03236	0.25	-2.0
3,401,337	+		CCNA_03236	0.26	-1.4
3,401,337	+		CCNA_03236	0.26	-0.7
3,401,337	+		CCNA_03236	0.26	-1.3
3,401,345	-		CCNA_03236	0.27	-1.3
3,401,345	-		CCNA_03236	0.27	-0.7
3,401,390	-		CCNA_03236	0.32	-1.6
3,401,457	+		CCNA_03236	0.40	-2.1
3,401,531	+		CCNA_03236	0.48	-0.4
3,401,540	-		CCNA_03236	0.49	-1.7
3,401,552	+		CCNA_03236	0.51	-1.8
3,401,557	+		CCNA_03236	0.51	-1.1
3,401,562	+		CCNA_03236	0.52	-2.1
3,401,562	+		CCNA_03236	0.52	-2.6
3,401,562	+		CCNA_03236	0.52	-1.9
3,401,570	-		CCNA_03236	0.53	-2.1
3,401,570	-		CCNA_03236	0.53	-2.3
3,401,570	-		CCNA_03236	0.53	-2.1
3,401,631	+		CCNA_03236	0.60	-2.3
3,401,639	-		CCNA_03236	0.61	-2.0
3,401,681	+		CCNA_03236	0.65	-3.1
3,401,696	-		CCNA_03236	0.67	-2.1
3,401,705	+		CCNA_03236	0.68	-2.3
3,401,709	-		CCNA_03236	0.68	+0.3
3,401,709	-				+1.9
3,401,709	-		CCNA_03236	0.68	-1.7
3,401,713	-		CCNA_03236	0.69	-1.4
3,401,713	-		CCNA_03236	0.69	-1.3
3,401,747	-		CCNA_03236	0.73	-0.9
3,401,766	-		CCNA_03236	0.75	-1.1
3,401,766	-		CCNA_03236	0.75	-0.3
3,401,840	+		CCNA_03236	0.83	-2.7
3,401,848	-		CCNA_03236	0.84	-1.7
3,401,850	+		CCNA_03236	0.85	-1.7
3,401,910	-				-1.8
3,401,939	-				-2.7