Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02194 and CCNA_02195 are separated by 7 nucleotides CCNA_02195 and CCNA_02196 are separated by 15 nucleotides CCNA_02196 and CCNA_02197 are separated by 88 nucleotides CCNA_02197 and CCNA_02198 are separated by 0 nucleotides
CCNA_02194: CCNA_02194 - fumarate hydratase, at 2,344,537 to 2,345,928
_02194
CCNA_02195: CCNA_02195 - acetyltransferase, at 2,345,936 to 2,346,370
_02195
CCNA_02196: CCNA_02196 - hypothetical protein, at 2,346,386 to 2,346,784
_02196
CCNA_02197: CCNA_02197 - hypothetical protein, at 2,346,873 to 2,347,463
_02197
CCNA_02198: CCNA_02198 - trans-isoprenyl diphosphate synthase, at 2,347,464 to 2,348,474
_02198
Position (kb)
2346
2347
2348 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2345.930 kb on - strand at 2345.984 kb on - strand, within CCNA_02195 at 2346.004 kb on + strand, within CCNA_02195 at 2346.007 kb on - strand, within CCNA_02195 at 2346.147 kb on + strand, within CCNA_02195 at 2346.174 kb on + strand, within CCNA_02195 at 2346.186 kb on + strand, within CCNA_02195 at 2346.225 kb on + strand, within CCNA_02195 at 2346.230 kb on + strand, within CCNA_02195 at 2346.230 kb on + strand, within CCNA_02195 at 2346.230 kb on + strand, within CCNA_02195 at 2346.238 kb on - strand, within CCNA_02195 at 2346.238 kb on - strand, within CCNA_02195 at 2346.238 kb on - strand, within CCNA_02195 at 2346.243 kb on - strand, within CCNA_02195 at 2346.245 kb on + strand, within CCNA_02195 at 2346.245 kb on + strand, within CCNA_02195 at 2346.245 kb on + strand, within CCNA_02195 at 2346.253 kb on - strand, within CCNA_02195 at 2346.255 kb on - strand, within CCNA_02195 at 2346.304 kb on + strand, within CCNA_02195 at 2346.312 kb on - strand, within CCNA_02195 at 2346.312 kb on - strand, within CCNA_02195 at 2346.312 kb on - strand, within CCNA_02195 at 2346.312 kb on - strand, within CCNA_02195 at 2346.321 kb on + strand, within CCNA_02195 at 2346.321 kb on + strand, within CCNA_02195 at 2346.329 kb on - strand at 2346.381 kb on + strand at 2346.400 kb on + strand at 2346.506 kb on + strand, within CCNA_02196 at 2346.514 kb on - strand, within CCNA_02196 at 2346.514 kb on - strand, within CCNA_02196 at 2346.558 kb on + strand, within CCNA_02196 at 2346.559 kb on - strand, within CCNA_02196 at 2346.566 kb on - strand, within CCNA_02196 at 2346.642 kb on + strand, within CCNA_02196 at 2346.661 kb on - strand, within CCNA_02196 at 2346.668 kb on + strand, within CCNA_02196 at 2346.674 kb on + strand, within CCNA_02196 at 2346.677 kb on - strand, within CCNA_02196 at 2346.677 kb on - strand, within CCNA_02196 at 2346.677 kb on - strand, within CCNA_02196 at 2346.677 kb on - strand, within CCNA_02196 at 2346.677 kb on - strand, within CCNA_02196 at 2346.677 kb on - strand, within CCNA_02196 at 2346.677 kb on - strand, within CCNA_02196 at 2346.682 kb on - strand, within CCNA_02196 at 2346.700 kb on + strand, within CCNA_02196 at 2346.700 kb on + strand, within CCNA_02196 at 2346.718 kb on - strand, within CCNA_02196 at 2346.764 kb on + strand at 2346.802 kb on + strand at 2346.804 kb on + strand at 2346.812 kb on - strand at 2346.843 kb on - strand at 2346.904 kb on - strand at 2346.964 kb on + strand, within CCNA_02197 at 2346.977 kb on - strand, within CCNA_02197 at 2346.987 kb on + strand, within CCNA_02197 at 2346.995 kb on - strand, within CCNA_02197 at 2346.996 kb on - strand, within CCNA_02197 at 2346.997 kb on - strand, within CCNA_02197 at 2347.004 kb on + strand, within CCNA_02197 at 2347.012 kb on - strand, within CCNA_02197 at 2347.034 kb on - strand, within CCNA_02197 at 2347.066 kb on + strand, within CCNA_02197 at 2347.069 kb on - strand, within CCNA_02197 at 2347.096 kb on + strand, within CCNA_02197 at 2347.101 kb on + strand, within CCNA_02197 at 2347.101 kb on + strand, within CCNA_02197 at 2347.101 kb on + strand, within CCNA_02197 at 2347.101 kb on + strand, within CCNA_02197 at 2347.109 kb on - strand, within CCNA_02197 at 2347.134 kb on + strand, within CCNA_02197 at 2347.135 kb on - strand, within CCNA_02197 at 2347.142 kb on - strand, within CCNA_02197 at 2347.142 kb on - strand, within CCNA_02197 at 2347.143 kb on - strand, within CCNA_02197 at 2347.143 kb on - strand, within CCNA_02197 at 2347.177 kb on + strand, within CCNA_02197 at 2347.177 kb on + strand, within CCNA_02197 at 2347.185 kb on - strand, within CCNA_02197 at 2347.195 kb on - strand, within CCNA_02197 at 2347.263 kb on - strand, within CCNA_02197 at 2347.281 kb on - strand, within CCNA_02197 at 2347.295 kb on + strand, within CCNA_02197 at 2347.296 kb on - strand, within CCNA_02197 at 2347.342 kb on - strand, within CCNA_02197 at 2347.407 kb on + strand at 2347.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 2,345,930 - +0.0 2,345,984 - CCNA_02195 0.11 -1.3 2,346,004 + CCNA_02195 0.16 +1.7 2,346,007 - CCNA_02195 0.16 +1.2 2,346,147 + CCNA_02195 0.49 +1.6 2,346,174 + CCNA_02195 0.55 +1.1 2,346,186 + CCNA_02195 0.57 +3.0 2,346,225 + CCNA_02195 0.66 +1.2 2,346,230 + CCNA_02195 0.68 +0.1 2,346,230 + CCNA_02195 0.68 -0.6 2,346,230 + CCNA_02195 0.68 +2.1 2,346,238 - CCNA_02195 0.69 +1.8 2,346,238 - CCNA_02195 0.69 +2.1 2,346,238 - CCNA_02195 0.69 +2.3 2,346,243 - CCNA_02195 0.71 +1.1 2,346,245 + CCNA_02195 0.71 +1.2 2,346,245 + CCNA_02195 0.71 -0.0 2,346,245 + CCNA_02195 0.71 +0.7 2,346,253 - CCNA_02195 0.73 +1.1 2,346,255 - CCNA_02195 0.73 +1.0 2,346,304 + CCNA_02195 0.85 +0.3 2,346,312 - CCNA_02195 0.86 +0.9 2,346,312 - CCNA_02195 0.86 +2.0 2,346,312 - CCNA_02195 0.86 +1.6 2,346,312 - CCNA_02195 0.86 +1.1 2,346,321 + CCNA_02195 0.89 +1.0 2,346,321 + CCNA_02195 0.89 +1.1 2,346,329 - +1.0 2,346,381 + -0.9 2,346,400 + +1.8 2,346,506 + CCNA_02196 0.30 -1.8 2,346,514 - CCNA_02196 0.32 +1.4 2,346,514 - CCNA_02196 0.32 +1.2 2,346,558 + CCNA_02196 0.43 -1.0 2,346,559 - CCNA_02196 0.43 +1.9 2,346,566 - CCNA_02196 0.45 +1.4 2,346,642 + CCNA_02196 0.64 +2.3 2,346,661 - CCNA_02196 0.69 +1.6 2,346,668 + CCNA_02196 0.71 +0.7 2,346,674 + CCNA_02196 0.72 -0.6 2,346,677 - CCNA_02196 0.73 +0.8 2,346,677 - CCNA_02196 0.73 +0.9 2,346,677 - CCNA_02196 0.73 +0.5 2,346,677 - CCNA_02196 0.73 +3.1 2,346,677 - CCNA_02196 0.73 +0.9 2,346,677 - CCNA_02196 0.73 +0.9 2,346,677 - CCNA_02196 0.73 +0.3 2,346,682 - CCNA_02196 0.74 +0.7 2,346,700 + CCNA_02196 0.79 +0.6 2,346,700 + CCNA_02196 0.79 +2.1 2,346,718 - CCNA_02196 0.83 +0.2 2,346,764 + -0.6 2,346,802 + -0.3 2,346,804 + +1.3 2,346,812 - +2.3 2,346,843 - +0.2 2,346,904 - +0.1 2,346,964 + CCNA_02197 0.15 -1.5 2,346,977 - CCNA_02197 0.18 +3.6 2,346,987 + CCNA_02197 0.19 -2.6 2,346,995 - CCNA_02197 0.21 +1.3 2,346,996 - CCNA_02197 0.21 +1.2 2,346,997 - CCNA_02197 0.21 +1.5 2,347,004 + CCNA_02197 0.22 -0.3 2,347,012 - CCNA_02197 0.24 +1.6 2,347,034 - CCNA_02197 0.27 +3.0 2,347,066 + CCNA_02197 0.33 +1.0 2,347,069 - CCNA_02197 0.33 +1.6 2,347,096 + CCNA_02197 0.38 -0.9 2,347,101 + CCNA_02197 0.39 -2.6 2,347,101 + CCNA_02197 0.39 -1.5 2,347,101 + CCNA_02197 0.39 +0.3 2,347,101 + CCNA_02197 0.39 -0.9 2,347,109 - CCNA_02197 0.40 +1.5 2,347,134 + CCNA_02197 0.44 -2.0 2,347,135 - CCNA_02197 0.44 +0.7 2,347,142 - CCNA_02197 0.46 +1.8 2,347,142 - CCNA_02197 0.46 +1.4 2,347,143 - CCNA_02197 0.46 +1.5 2,347,143 - CCNA_02197 0.46 +1.7 2,347,177 + CCNA_02197 0.51 -1.9 2,347,177 + CCNA_02197 0.51 -2.4 2,347,185 - CCNA_02197 0.53 +1.2 2,347,195 - CCNA_02197 0.54 +1.3 2,347,263 - CCNA_02197 0.66 +2.0 2,347,281 - CCNA_02197 0.69 +1.5 2,347,295 + CCNA_02197 0.71 +0.7 2,347,296 - CCNA_02197 0.72 +1.2 2,347,342 - CCNA_02197 0.79 +1.1 2,347,407 + -0.3 2,347,409 - +1.8
Or see this region's nucleotide sequence