Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01687

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01686 and CCNA_01687 overlap by 4 nucleotidesCCNA_01687 and CCNA_01688 overlap by 4 nucleotides CCNA_01686: CCNA_01686 - exopolyphosphatase GppA, at 1,813,006 to 1,814,112 _01686 CCNA_01687: CCNA_01687 - FtsJ-family 23S rRNA methylase, at 1,814,109 to 1,814,819 _01687 CCNA_01688: CCNA_01688 - potassium channel protein, at 1,814,816 to 1,815,859 _01688 Position (kb) 1814 1815Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1813.127 kb on + strand, within CCNA_01686at 1813.127 kb on + strand, within CCNA_01686at 1813.153 kb on + strand, within CCNA_01686at 1813.161 kb on - strand, within CCNA_01686at 1813.184 kb on + strand, within CCNA_01686at 1813.212 kb on + strand, within CCNA_01686at 1813.306 kb on + strand, within CCNA_01686at 1813.308 kb on - strand, within CCNA_01686at 1813.314 kb on - strand, within CCNA_01686at 1813.319 kb on - strand, within CCNA_01686at 1813.342 kb on - strand, within CCNA_01686at 1813.425 kb on + strand, within CCNA_01686at 1813.427 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.505 kb on - strand, within CCNA_01686at 1813.505 kb on - strand, within CCNA_01686at 1813.505 kb on - strand, within CCNA_01686at 1813.515 kb on - strand, within CCNA_01686at 1813.529 kb on + strand, within CCNA_01686at 1813.585 kb on + strand, within CCNA_01686at 1813.597 kb on + strand, within CCNA_01686at 1813.605 kb on - strand, within CCNA_01686at 1813.627 kb on + strand, within CCNA_01686at 1813.635 kb on + strand, within CCNA_01686at 1813.635 kb on + strand, within CCNA_01686at 1813.643 kb on - strand, within CCNA_01686at 1813.643 kb on - strand, within CCNA_01686at 1813.679 kb on + strand, within CCNA_01686at 1813.683 kb on + strand, within CCNA_01686at 1813.683 kb on + strand, within CCNA_01686at 1813.692 kb on - strand, within CCNA_01686at 1813.731 kb on + strand, within CCNA_01686at 1813.731 kb on + strand, within CCNA_01686at 1813.731 kb on + strand, within CCNA_01686at 1813.736 kb on + strand, within CCNA_01686at 1813.739 kb on - strand, within CCNA_01686at 1813.741 kb on + strand, within CCNA_01686at 1813.766 kb on + strand, within CCNA_01686at 1813.885 kb on - strand, within CCNA_01686at 1813.900 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.966 kb on + strand, within CCNA_01686at 1813.966 kb on + strand, within CCNA_01686at 1814.012 kb on + strandat 1814.013 kb on + strandat 1814.020 kb on - strandat 1814.036 kb on - strandat 1814.036 kb on - strandat 1814.810 kb on - strandat 1814.820 kb on + strandat 1814.820 kb on + strandat 1814.820 kb on + strandat 1814.828 kb on - strandat 1814.828 kb on - strandat 1814.834 kb on - strandat 1814.857 kb on + strandat 1814.872 kb on + strandat 1814.923 kb on - strand, within CCNA_01688at 1814.965 kb on + strand, within CCNA_01688at 1814.967 kb on - strand, within CCNA_01688at 1814.972 kb on - strand, within CCNA_01688at 1814.994 kb on + strand, within CCNA_01688at 1814.997 kb on - strand, within CCNA_01688at 1815.053 kb on + strand, within CCNA_01688at 1815.063 kb on - strand, within CCNA_01688at 1815.094 kb on + strand, within CCNA_01688at 1815.102 kb on - strand, within CCNA_01688at 1815.102 kb on - strand, within CCNA_01688at 1815.131 kb on + strand, within CCNA_01688at 1815.154 kb on - strand, within CCNA_01688at 1815.171 kb on + strand, within CCNA_01688at 1815.171 kb on + strand, within CCNA_01688at 1815.176 kb on + strand, within CCNA_01688at 1815.198 kb on + strand, within CCNA_01688at 1815.211 kb on - strand, within CCNA_01688at 1815.241 kb on + strand, within CCNA_01688at 1815.313 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.361 kb on + strand, within CCNA_01688at 1815.368 kb on + strand, within CCNA_01688at 1815.368 kb on + strand, within CCNA_01688at 1815.381 kb on - strand, within CCNA_01688at 1815.385 kb on + strand, within CCNA_01688at 1815.393 kb on - strand, within CCNA_01688at 1815.406 kb on - strand, within CCNA_01688at 1815.437 kb on - strand, within CCNA_01688at 1815.443 kb on + strand, within CCNA_01688at 1815.469 kb on + strand, within CCNA_01688at 1815.469 kb on + strand, within CCNA_01688at 1815.477 kb on - strand, within CCNA_01688at 1815.529 kb on + strand, within CCNA_01688at 1815.532 kb on - strand, within CCNA_01688at 1815.558 kb on + strand, within CCNA_01688at 1815.568 kb on - strand, within CCNA_01688at 1815.590 kb on - strand, within CCNA_01688at 1815.614 kb on - strand, within CCNA_01688at 1815.638 kb on + strand, within CCNA_01688at 1815.639 kb on + strand, within CCNA_01688at 1815.653 kb on - strand, within CCNA_01688at 1815.670 kb on + strand, within CCNA_01688at 1815.696 kb on - strand, within CCNA_01688at 1815.710 kb on - strand, within CCNA_01688at 1815.712 kb on + strand, within CCNA_01688at 1815.712 kb on + strand, within CCNA_01688at 1815.717 kb on + strand, within CCNA_01688at 1815.717 kb on + strand, within CCNA_01688at 1815.730 kb on - strand, within CCNA_01688at 1815.753 kb on - strand, within CCNA_01688at 1815.757 kb on - strandat 1815.769 kb on + strandat 1815.769 kb on + strandat 1815.769 kb on + strandat 1815.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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1,813,127 + CCNA_01686 0.11 -1.9
1,813,127 + CCNA_01686 0.11 +0.2
1,813,153 + CCNA_01686 0.13 -1.4
1,813,161 - CCNA_01686 0.14 -2.9
1,813,184 + CCNA_01686 0.16 -0.8
1,813,212 + CCNA_01686 0.19 -1.0
1,813,306 + CCNA_01686 0.27 -1.3
1,813,308 - CCNA_01686 0.27 -1.7
1,813,314 - CCNA_01686 0.28 -1.5
1,813,319 - CCNA_01686 0.28 -1.4
1,813,342 - CCNA_01686 0.30 -1.2
1,813,425 + CCNA_01686 0.38 -0.4
1,813,427 + CCNA_01686 0.38 -1.5
1,813,497 + CCNA_01686 0.44 -2.2
1,813,497 + CCNA_01686 0.44 -0.4
1,813,497 + CCNA_01686 0.44 +1.2
1,813,497 + CCNA_01686 0.44 -1.8
1,813,497 + CCNA_01686 0.44 -1.6
1,813,497 + CCNA_01686 0.44 -0.9
1,813,497 + CCNA_01686 0.44 -1.7
1,813,497 + CCNA_01686 0.44 +0.6
1,813,497 + CCNA_01686 0.44 -1.7
1,813,497 + CCNA_01686 0.44 -0.1
1,813,497 + CCNA_01686 0.44 -1.5
1,813,497 + CCNA_01686 0.44 +0.6
1,813,505 - CCNA_01686 0.45 +0.6
1,813,505 - CCNA_01686 0.45 -1.8
1,813,505 - CCNA_01686 0.45 -0.1
1,813,515 - CCNA_01686 0.46 -0.8
1,813,529 + CCNA_01686 0.47 -0.7
1,813,585 + CCNA_01686 0.52 -1.1
1,813,597 + CCNA_01686 0.53 +0.2
1,813,605 - CCNA_01686 0.54 +0.9
1,813,627 + CCNA_01686 0.56 +1.2
1,813,635 + CCNA_01686 0.57 -0.9
1,813,635 + CCNA_01686 0.57 -1.5
1,813,643 - CCNA_01686 0.58 +0.6
1,813,643 - CCNA_01686 0.58 -1.2
1,813,679 + CCNA_01686 0.61 +2.2
1,813,683 + CCNA_01686 0.61 -0.4
1,813,683 + CCNA_01686 0.61 +1.5
1,813,692 - CCNA_01686 0.62 -0.9
1,813,731 + CCNA_01686 0.65 +0.1
1,813,731 + CCNA_01686 0.65 -3.2
1,813,731 + CCNA_01686 0.65 -1.9
1,813,736 + CCNA_01686 0.66 +1.2
1,813,739 - CCNA_01686 0.66 -0.8
1,813,741 + CCNA_01686 0.66 -0.5
1,813,766 + CCNA_01686 0.69 -1.1
1,813,885 - CCNA_01686 0.79 -1.6
1,813,900 + CCNA_01686 0.81 +0.0
1,813,956 + CCNA_01686 0.86 +0.4
1,813,956 + CCNA_01686 0.86 -0.6
1,813,956 + CCNA_01686 0.86 -2.4
1,813,956 + CCNA_01686 0.86 -0.6
1,813,956 + CCNA_01686 0.86 -0.9
1,813,964 - CCNA_01686 0.87 -0.1
1,813,964 - CCNA_01686 0.87 +0.4
1,813,964 - CCNA_01686 0.87 -0.9
1,813,964 - CCNA_01686 0.87 -2.9
1,813,964 - CCNA_01686 0.87 -1.8
1,813,966 + CCNA_01686 0.87 +0.6
1,813,966 + CCNA_01686 0.87 -0.8
1,814,012 + -0.8
1,814,013 + -1.7
1,814,020 - +0.6
1,814,036 - -1.9
1,814,036 - -1.6
1,814,810 - +2.2
1,814,820 + +2.0
1,814,820 + +2.0
1,814,820 + +1.8
1,814,828 - -1.3
1,814,828 - -1.3
1,814,834 - +0.9
1,814,857 + +1.7
1,814,872 + +1.3
1,814,923 - CCNA_01688 0.10 -1.9
1,814,965 + CCNA_01688 0.14 +0.4
1,814,967 - CCNA_01688 0.14 +0.2
1,814,972 - CCNA_01688 0.15 +1.1
1,814,994 + CCNA_01688 0.17 -0.0
1,814,997 - CCNA_01688 0.17 -2.3
1,815,053 + CCNA_01688 0.23 -1.1
1,815,063 - CCNA_01688 0.24 +0.1
1,815,094 + CCNA_01688 0.27 +1.4
1,815,102 - CCNA_01688 0.27 +0.7
1,815,102 - CCNA_01688 0.27 -0.1
1,815,131 + CCNA_01688 0.30 -0.3
1,815,154 - CCNA_01688 0.32 -1.2
1,815,171 + CCNA_01688 0.34 +0.5
1,815,171 + CCNA_01688 0.34 +0.2
1,815,176 + CCNA_01688 0.34 +0.8
1,815,198 + CCNA_01688 0.37 +1.5
1,815,211 - CCNA_01688 0.38 +0.3
1,815,241 + CCNA_01688 0.41 +1.4
1,815,313 + CCNA_01688 0.48 +2.2
1,815,361 + CCNA_01688 0.52 +0.5
1,815,361 + CCNA_01688 0.52 -0.7
1,815,361 + CCNA_01688 0.52 +1.3
1,815,361 + CCNA_01688 0.52 +0.5
1,815,361 + CCNA_01688 0.52 -0.2
1,815,368 + CCNA_01688 0.53 +1.2
1,815,368 + CCNA_01688 0.53 -0.1
1,815,381 - CCNA_01688 0.54 -0.9
1,815,385 + CCNA_01688 0.55 +1.6
1,815,393 - CCNA_01688 0.55 +2.8
1,815,406 - CCNA_01688 0.57 -2.2
1,815,437 - CCNA_01688 0.59 -1.7
1,815,443 + CCNA_01688 0.60 +0.7
1,815,469 + CCNA_01688 0.63 +1.7
1,815,469 + CCNA_01688 0.63 +2.7
1,815,477 - CCNA_01688 0.63 +1.7
1,815,529 + CCNA_01688 0.68 +0.9
1,815,532 - CCNA_01688 0.69 -2.8
1,815,558 + CCNA_01688 0.71 +1.0
1,815,568 - CCNA_01688 0.72 +0.2
1,815,590 - CCNA_01688 0.74 -1.6
1,815,614 - CCNA_01688 0.76 +0.9
1,815,638 + CCNA_01688 0.79 +0.8
1,815,639 + CCNA_01688 0.79 +1.1
1,815,653 - CCNA_01688 0.80 -0.7
1,815,670 + CCNA_01688 0.82 +1.0
1,815,696 - CCNA_01688 0.84 -0.2
1,815,710 - CCNA_01688 0.86 +0.2
1,815,712 + CCNA_01688 0.86 +0.3
1,815,712 + CCNA_01688 0.86 +0.5
1,815,717 + CCNA_01688 0.86 +2.7
1,815,717 + CCNA_01688 0.86 +1.4
1,815,730 - CCNA_01688 0.88 -2.2
1,815,753 - CCNA_01688 0.90 +0.1
1,815,757 - +1.2
1,815,769 + +1.9
1,815,769 + +0.4
1,815,769 + -0.6
1,815,777 - -0.3

Or see this region's nucleotide sequence