Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01234

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
1,360,388	-		CCNA_01233	0.15	-0.4
1,360,432	-		CCNA_01233	0.20	-0.4
1,360,436	+		CCNA_01233	0.20	-1.9
1,360,436	+		CCNA_01233	0.20	-0.0
1,360,467	+		CCNA_01233	0.24	-0.0
1,360,476	+		CCNA_01233	0.25	-0.4
1,360,476	+		CCNA_01233	0.25	-2.1
1,360,484	-		CCNA_01233	0.25	-1.2
1,360,484	-		CCNA_01233	0.25	+1.6
1,360,501	+		CCNA_01233	0.27	+1.2
1,360,509	-		CCNA_01233	0.28	-1.1
1,360,520	-				+1.0
1,360,524	-		CCNA_01233	0.30	-1.6
1,360,545	+		CCNA_01233	0.32	-2.3
1,360,635	-		CCNA_01233	0.42	-1.7
1,360,653	-		CCNA_01233	0.44	+0.4
1,360,666	+		CCNA_01233	0.45	+0.4
1,360,674	-		CCNA_01233	0.46	+0.3
1,360,684	-		CCNA_01233	0.47	-3.0
1,360,745	-		CCNA_01233	0.54	+0.2
1,360,768	+		CCNA_01233	0.57	-1.4
1,360,788	+		CCNA_01233	0.59	-0.7
1,360,797	+		CCNA_01233	0.60	+0.6
1,360,816	+		CCNA_01233	0.62	-2.5
1,360,822	-		CCNA_01233	0.63	-0.5
1,360,837	+		CCNA_01233	0.64	-0.0
1,360,839	-		CCNA_01233	0.64	-0.6
1,360,847	+		CCNA_01233	0.65	-0.9
1,360,847	+		CCNA_01233	0.65	-0.9
1,360,847	+		CCNA_01233	0.65	-1.0
1,360,855	-		CCNA_01233	0.66	-1.2
1,360,871	+		CCNA_01233	0.68	-0.4
1,360,872	-		CCNA_01233	0.68	-0.7
1,360,914	+		CCNA_01233	0.73	-2.8
1,360,929	-		CCNA_01233	0.74	+0.4
1,360,938	+		CCNA_01233	0.75	-0.0
1,360,986	+		CCNA_01233	0.81	-1.4
1,360,986	+		CCNA_01233	0.81	-1.0
1,360,988	-		CCNA_01233	0.81	-0.4
1,361,057	+		CCNA_01233	0.88	+0.4
1,361,062	+		CCNA_01233	0.89	-2.3
1,361,062	+		CCNA_01233	0.89	+0.4
1,361,065	-		CCNA_01233	0.89	-1.2
1,361,072	-				+2.0
1,361,086	+				-0.8
1,361,089	-				+0.2
1,361,091	+				-1.7
1,361,091	+				-0.6
1,361,091	+				-0.1
1,361,091	+				-0.4
1,361,091	+				-0.7
1,361,094	-				+0.1
1,361,096	-				-0.2
1,361,099	-				+1.5
1,361,099	-				+1.6
1,361,099	-				+0.1
1,361,124	+				-0.8
1,361,132	-				-0.6
1,361,132	-				-0.4
1,361,171	-				+1.2
1,361,237	+				-0.4
1,361,256	+				+3.0
1,361,264	-				-1.2
1,361,265	+				-0.4
1,361,266	+				+1.0
1,361,267	+				-1.2
1,361,317	-				+3.0
1,361,348	+				+1.5
1,361,356	+				-1.8
1,361,356	+				-0.4
1,361,367	+		CCNA_01234	0.11	-1.4
1,361,375	-		CCNA_01234	0.12	-0.9
1,361,375	-		CCNA_01234	0.12	-2.2
1,361,418	-		CCNA_01234	0.16	-2.7
1,361,419	-		CCNA_01234	0.16	-1.9
1,361,431	+		CCNA_01234	0.17	-0.4
1,361,436	+		CCNA_01234	0.17	+1.1
1,361,437	+		CCNA_01234	0.17	-2.5
1,361,444	-		CCNA_01234	0.18	+0.3
1,361,444	-		CCNA_01234	0.18	-0.6
1,361,456	+		CCNA_01234	0.19	-0.4
1,361,456	+		CCNA_01234	0.19	-3.0
1,361,464	-		CCNA_01234	0.20	-1.2
1,361,493	-		CCNA_01234	0.22	-1.4
1,361,499	-		CCNA_01234	0.23	-0.1
1,361,501	-		CCNA_01234	0.23	-0.6
1,361,513	+		CCNA_01234	0.24	-0.6
1,361,539	-		CCNA_01234	0.27	+0.4
1,361,574	+		CCNA_01234	0.30	-0.5
1,361,580	-		CCNA_01234	0.30	-0.4
1,361,586	+		CCNA_01234	0.31	-0.0
1,361,586	+		CCNA_01234	0.31	-0.3
1,361,594	-		CCNA_01234	0.32	-0.9
1,361,594	-		CCNA_01234	0.32	-1.7
1,361,594	-		CCNA_01234	0.32	-2.0
1,361,603	+		CCNA_01234	0.33	-2.4
1,361,609	+		CCNA_01234	0.33	-0.4
1,361,626	+		CCNA_01234	0.35	-0.3
1,361,639	-		CCNA_01234	0.36	-1.4
1,361,667	+		CCNA_01234	0.38	-0.5
1,361,667	+		CCNA_01234	0.38	+0.6
1,361,675	-		CCNA_01234	0.39	+1.3
1,361,675	-		CCNA_01234	0.39	+2.1
1,361,675	-		CCNA_01234	0.39	+2.6
1,361,675	-		CCNA_01234	0.39	+0.9
1,361,684	+		CCNA_01234	0.40	-0.9
1,361,684	+		CCNA_01234	0.40	-3.2
1,361,684	+		CCNA_01234	0.40	-1.7
1,361,684	+		CCNA_01234	0.40	-0.5
1,361,684	+		CCNA_01234	0.40	-1.0
1,361,684	+		CCNA_01234	0.40	-1.1
1,361,692	-		CCNA_01234	0.41	-0.7
1,361,703	+		CCNA_01234	0.42	-1.7
1,361,705	-		CCNA_01234	0.42	+2.0
1,361,706	-		CCNA_01234	0.42	-0.0
1,361,715	+		CCNA_01234	0.43	+1.4
1,361,715	+		CCNA_01234	0.43	-1.3
1,361,715	+		CCNA_01234	0.43	-0.0
1,361,715	+		CCNA_01234	0.43	-0.4
1,361,717	+		CCNA_01234	0.43	-2.6
1,361,723	-		CCNA_01234	0.43	-0.8
1,361,723	-		CCNA_01234	0.43	-2.0
1,361,723	-		CCNA_01234	0.43	-0.5
1,361,723	-		CCNA_01234	0.43	-1.3
1,361,859	+		CCNA_01234	0.56	+0.6
1,361,859	+		CCNA_01234	0.56	-1.0
1,361,860	-		CCNA_01234	0.56	-2.4
1,361,867	-		CCNA_01234	0.57	+0.4
1,361,935	+		CCNA_01234	0.63	-1.2
1,361,982	+		CCNA_01234	0.67	-0.0
1,361,982	+		CCNA_01234	0.67	-1.7
1,361,995	+		CCNA_01234	0.68	-0.6
1,362,003	-		CCNA_01234	0.69	-1.3
1,362,019	+		CCNA_01234	0.71	-0.9
1,362,037	+		CCNA_01234	0.72	-1.6
1,362,105	+		CCNA_01234	0.78	+1.5
1,362,146	-		CCNA_01234	0.82	-0.6
1,362,296	+				-0.4
1,362,304	-				+0.1
1,362,315	+				+1.0
1,362,367	+				+2.1
1,362,367	+				+1.8
1,362,367	+				+0.7
1,362,367	+				+0.4
1,362,367	+				+1.2
1,362,369	+				-1.1
1,362,372	+				-0.5
1,362,375	-				-3.3
1,362,375	-				+0.3
1,362,422	+				+1.9
1,362,422	+				+1.9
1,362,474	+		CCNA_01235	0.11	+1.1
1,362,484	+		CCNA_01235	0.13	+2.0
1,362,498	+		CCNA_01235	0.15	+2.8
1,362,508	+		CCNA_01235	0.17	+1.4
1,362,518	+		CCNA_01235	0.18	+2.2
1,362,536	-		CCNA_01235	0.21	-0.2
1,362,562	-		CCNA_01235	0.25	+0.6
1,362,606	-		CCNA_01235	0.32	+0.5
1,362,616	-		CCNA_01235	0.34	-0.0
1,362,651	+		CCNA_01235	0.39	+1.4
1,362,651	+		CCNA_01235	0.39	+1.1
1,362,675	+		CCNA_01235	0.43	+3.0
1,362,683	-		CCNA_01235	0.44	-0.4
1,362,685	+		CCNA_01235	0.45	+1.4
1,362,687	+		CCNA_01235	0.45	+1.8
1,362,687	+		CCNA_01235	0.45	+1.7
1,362,695	-		CCNA_01235	0.46	-1.3
1,362,695	-		CCNA_01235	0.46	-1.6
1,362,756	+		CCNA_01235	0.56	+0.9
1,362,822	+		CCNA_01235	0.66	+0.8
1,362,822	+		CCNA_01235	0.66	+1.5
1,362,822	-		CCNA_01235	0.66	+2.3
1,362,827	+		CCNA_01235	0.67	+1.6
1,362,878	+		CCNA_01235	0.75	+0.5
1,362,896	+		CCNA_01235	0.78	+2.3
1,362,897	+		CCNA_01235	0.78	+1.2
1,362,916	+		CCNA_01235	0.81	+1.5
1,362,916	+		CCNA_01235	0.81	+1.7
1,362,924	-		CCNA_01235	0.82	+0.3
1,362,931	-		CCNA_01235	0.83	-0.6
1,362,961	-		CCNA_01235	0.88	-1.7
1,363,007	+				+0.2
1,363,011	+				+2.3
1,363,011	+				+0.7
1,363,011	+				+2.8
1,363,011	+				+1.6
1,363,015	-				+0.1
1,363,017	-				+1.0
1,363,019	-				-0.7
1,363,062	+				+0.8
1,363,063	+				-0.6
1,363,119	+				-1.0
1,363,134	+		CCNA_01236	0.15	-0.0
1,363,134	+		CCNA_01236	0.15	+0.4
1,363,142	-		CCNA_01236	0.18	-0.6
1,363,322	-				+1.3