Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00313

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00311 and CCNA_00312 are separated by 55 nucleotidesCCNA_00312 and CCNA_00313 are separated by 84 nucleotidesCCNA_00313 and CCNA_00314 are separated by 42 nucleotidesCCNA_00314 and CCNA_00315 are separated by 25 nucleotides CCNA_00311: CCNA_00311 - Zn-dependent protease family protein, at 324,842 to 326,173 _00311 CCNA_00312: CCNA_00312 - putative membrane spanning protein, at 326,229 to 326,630 _00312 CCNA_00313: CCNA_00313 - peptidase, M14 family, at 326,715 to 328,544 _00313 CCNA_00314: CCNA_00314 - hypothetical protein, at 328,587 to 329,198 _00314 CCNA_00315: CCNA_00315 - 3-polyprenyl-4-hydroxybenzoate decarboxylase, at 329,224 to 330,753 _00315 Position (kb) 326 327 328 329Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 325.758 kb on + strand, within CCNA_00311at 325.765 kb on - strand, within CCNA_00311at 325.766 kb on - strand, within CCNA_00311at 325.780 kb on - strand, within CCNA_00311at 325.780 kb on - strand, within CCNA_00311at 325.807 kb on - strand, within CCNA_00311at 325.829 kb on - strand, within CCNA_00311at 325.838 kb on - strand, within CCNA_00311at 325.848 kb on - strand, within CCNA_00311at 325.935 kb on + strand, within CCNA_00311at 325.945 kb on + strand, within CCNA_00311at 325.970 kb on - strand, within CCNA_00311at 325.984 kb on + strand, within CCNA_00311at 326.025 kb on + strand, within CCNA_00311at 326.031 kb on - strand, within CCNA_00311at 326.040 kb on + strandat 326.040 kb on + strandat 326.040 kb on + strandat 326.050 kb on + strandat 326.050 kb on + strandat 326.058 kb on - strandat 326.127 kb on + strandat 326.185 kb on - strandat 326.193 kb on - strandat 326.201 kb on - strandat 326.201 kb on - strandat 326.201 kb on - strandat 326.262 kb on + strandat 326.269 kb on + strandat 326.270 kb on - strand, within CCNA_00312at 326.276 kb on - strand, within CCNA_00312at 326.276 kb on - strand, within CCNA_00312at 326.277 kb on - strand, within CCNA_00312at 326.328 kb on + strand, within CCNA_00312at 326.336 kb on + strand, within CCNA_00312at 326.344 kb on - strand, within CCNA_00312at 326.364 kb on + strand, within CCNA_00312at 326.377 kb on - strand, within CCNA_00312at 326.377 kb on - strand, within CCNA_00312at 326.377 kb on - strand, within CCNA_00312at 326.378 kb on - strand, within CCNA_00312at 326.415 kb on + strand, within CCNA_00312at 326.423 kb on - strand, within CCNA_00312at 326.505 kb on - strand, within CCNA_00312at 326.516 kb on + strand, within CCNA_00312at 326.519 kb on - strand, within CCNA_00312at 326.521 kb on + strand, within CCNA_00312at 326.587 kb on - strand, within CCNA_00312at 326.598 kb on - strandat 326.598 kb on - strandat 326.600 kb on + strandat 326.653 kb on - strandat 326.653 kb on - strandat 326.748 kb on - strandat 326.748 kb on - strandat 326.748 kb on - strandat 326.759 kb on - strandat 326.761 kb on + strandat 326.779 kb on - strandat 326.790 kb on + strandat 326.790 kb on + strandat 326.818 kb on + strandat 326.828 kb on - strandat 326.905 kb on + strand, within CCNA_00313at 326.931 kb on + strand, within CCNA_00313at 326.974 kb on - strand, within CCNA_00313at 326.976 kb on + strand, within CCNA_00313at 327.066 kb on + strand, within CCNA_00313at 327.081 kb on - strand, within CCNA_00313at 327.081 kb on - strand, within CCNA_00313at 327.093 kb on + strand, within CCNA_00313at 327.101 kb on - strand, within CCNA_00313at 327.105 kb on + strand, within CCNA_00313at 327.127 kb on + strand, within CCNA_00313at 327.133 kb on + strand, within CCNA_00313at 327.186 kb on + strand, within CCNA_00313at 327.191 kb on + strand, within CCNA_00313at 327.204 kb on - strand, within CCNA_00313at 327.204 kb on - strand, within CCNA_00313at 327.206 kb on + strand, within CCNA_00313at 327.240 kb on + strand, within CCNA_00313at 327.254 kb on - strand, within CCNA_00313at 327.294 kb on + strand, within CCNA_00313at 327.302 kb on - strand, within CCNA_00313at 327.302 kb on - strand, within CCNA_00313at 327.302 kb on - strand, within CCNA_00313at 327.304 kb on + strand, within CCNA_00313at 327.312 kb on - strand, within CCNA_00313at 327.312 kb on - strand, within CCNA_00313at 327.341 kb on + strand, within CCNA_00313at 327.374 kb on - strand, within CCNA_00313at 327.518 kb on + strand, within CCNA_00313at 327.521 kb on - strand, within CCNA_00313at 327.521 kb on - strand, within CCNA_00313at 327.533 kb on + strand, within CCNA_00313at 327.541 kb on - strand, within CCNA_00313at 327.544 kb on - strand, within CCNA_00313at 327.571 kb on + strand, within CCNA_00313at 327.574 kb on - strand, within CCNA_00313at 327.579 kb on - strand, within CCNA_00313at 327.580 kb on - strand, within CCNA_00313at 327.595 kb on + strand, within CCNA_00313at 327.654 kb on + strand, within CCNA_00313at 327.683 kb on - strand, within CCNA_00313at 327.683 kb on - strand, within CCNA_00313at 327.707 kb on + strand, within CCNA_00313at 327.708 kb on + strand, within CCNA_00313at 327.708 kb on + strand, within CCNA_00313at 327.727 kb on + strand, within CCNA_00313at 327.729 kb on - strand, within CCNA_00313at 327.753 kb on - strand, within CCNA_00313at 327.789 kb on + strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.829 kb on - strand, within CCNA_00313at 327.842 kb on - strand, within CCNA_00313at 327.847 kb on - strand, within CCNA_00313at 327.863 kb on - strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.892 kb on + strand, within CCNA_00313at 327.957 kb on - strand, within CCNA_00313at 327.976 kb on + strand, within CCNA_00313at 327.999 kb on - strand, within CCNA_00313at 328.016 kb on + strand, within CCNA_00313at 328.021 kb on + strand, within CCNA_00313at 328.034 kb on - strand, within CCNA_00313at 328.042 kb on - strand, within CCNA_00313at 328.051 kb on - strand, within CCNA_00313at 328.060 kb on - strand, within CCNA_00313at 328.069 kb on + strand, within CCNA_00313at 328.095 kb on - strand, within CCNA_00313at 328.132 kb on - strand, within CCNA_00313at 328.165 kb on + strand, within CCNA_00313at 328.225 kb on - strand, within CCNA_00313at 328.225 kb on - strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.294 kb on + strand, within CCNA_00313at 328.296 kb on - strand, within CCNA_00313at 328.302 kb on - strand, within CCNA_00313at 328.302 kb on - strand, within CCNA_00313at 328.315 kb on - strand, within CCNA_00313at 328.330 kb on + strand, within CCNA_00313at 328.363 kb on + strandat 328.363 kb on + strandat 328.371 kb on - strandat 328.409 kb on - strandat 328.414 kb on - strandat 328.465 kb on + strandat 328.473 kb on - strandat 328.479 kb on + strandat 328.479 kb on + strandat 328.479 kb on + strandat 328.479 kb on + strandat 328.483 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.546 kb on + strandat 328.568 kb on - strandat 328.570 kb on - strandat 328.601 kb on + strandat 328.609 kb on - strandat 328.618 kb on - strandat 328.623 kb on - strandat 328.688 kb on + strand, within CCNA_00314at 328.688 kb on + strand, within CCNA_00314at 328.743 kb on + strand, within CCNA_00314at 328.750 kb on - strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.758 kb on + strand, within CCNA_00314at 328.765 kb on + strand, within CCNA_00314at 328.773 kb on - strand, within CCNA_00314at 328.859 kb on + strand, within CCNA_00314at 328.926 kb on + strand, within CCNA_00314at 328.934 kb on - strand, within CCNA_00314at 328.954 kb on - strand, within CCNA_00314at 328.959 kb on - strand, within CCNA_00314at 328.961 kb on + strand, within CCNA_00314at 328.961 kb on + strand, within CCNA_00314at 328.969 kb on - strand, within CCNA_00314at 328.992 kb on + strand, within CCNA_00314at 328.992 kb on + strand, within CCNA_00314at 328.997 kb on + strand, within CCNA_00314at 328.997 kb on - strand, within CCNA_00314at 329.002 kb on + strand, within CCNA_00314at 329.003 kb on + strand, within CCNA_00314at 329.010 kb on - strand, within CCNA_00314at 329.010 kb on - strand, within CCNA_00314at 329.014 kb on + strand, within CCNA_00314at 329.019 kb on + strand, within CCNA_00314at 329.027 kb on - strand, within CCNA_00314at 329.050 kb on + strand, within CCNA_00314at 329.071 kb on + strand, within CCNA_00314at 329.074 kb on - strand, within CCNA_00314at 329.079 kb on - strand, within CCNA_00314at 329.094 kb on - strand, within CCNA_00314at 329.094 kb on - strand, within CCNA_00314at 329.096 kb on + strand, within CCNA_00314at 329.096 kb on + strand, within CCNA_00314at 329.104 kb on - strand, within CCNA_00314at 329.157 kb on - strandat 329.217 kb on + strandat 329.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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325,758 + CCNA_00311 0.69 +1.5
325,765 - CCNA_00311 0.69 +1.5
325,766 - CCNA_00311 0.69 +0.7
325,780 - CCNA_00311 0.70 +1.4
325,780 - CCNA_00311 0.70 +1.9
325,807 - CCNA_00311 0.72 +1.2
325,829 - CCNA_00311 0.74 +1.6
325,838 - CCNA_00311 0.75 +1.5
325,848 - CCNA_00311 0.76 +1.3
325,935 + CCNA_00311 0.82 -0.1
325,945 + CCNA_00311 0.83 +0.9
325,970 - CCNA_00311 0.85 +0.5
325,984 + CCNA_00311 0.86 +0.7
326,025 + CCNA_00311 0.89 -0.8
326,031 - CCNA_00311 0.89 +1.8
326,040 + +0.3
326,040 + +0.3
326,040 + +0.2
326,050 + -0.2
326,050 + -0.5
326,058 - +2.0
326,127 + -1.9
326,185 - +1.3
326,193 - +0.7
326,201 - +1.7
326,201 - +2.6
326,201 - +1.9
326,262 + +0.2
326,269 + -2.4
326,270 - CCNA_00312 0.10 -0.0
326,276 - CCNA_00312 0.12 -0.5
326,276 - CCNA_00312 0.12 -1.5
326,277 - CCNA_00312 0.12 -1.3
326,328 + CCNA_00312 0.25 -3.1
326,336 + CCNA_00312 0.27 -1.1
326,344 - CCNA_00312 0.29 -0.2
326,364 + CCNA_00312 0.34 -2.1
326,377 - CCNA_00312 0.37 +0.4
326,377 - CCNA_00312 0.37 -1.0
326,377 - CCNA_00312 0.37 -1.2
326,378 - CCNA_00312 0.37 -1.7
326,415 + CCNA_00312 0.46 -3.5
326,423 - CCNA_00312 0.48 -2.5
326,505 - CCNA_00312 0.69 -0.5
326,516 + CCNA_00312 0.71 -2.5
326,519 - CCNA_00312 0.72 -1.5
326,521 + CCNA_00312 0.73 -0.5
326,587 - CCNA_00312 0.89 +0.8
326,598 - -0.3
326,598 - -1.2
326,600 + -1.6
326,653 - +1.0
326,653 - +1.4
326,748 - +0.6
326,748 - +1.5
326,748 - +1.4
326,759 - +1.2
326,761 + -0.6
326,779 - +0.7
326,790 + -1.8
326,790 + -0.3
326,818 + -1.2
326,828 - +0.9
326,905 + CCNA_00313 0.10 -0.2
326,931 + CCNA_00313 0.12 -0.1
326,974 - CCNA_00313 0.14 +0.5
326,976 + CCNA_00313 0.14 +0.5
327,066 + CCNA_00313 0.19 +3.4
327,081 - CCNA_00313 0.20 +1.6
327,081 - CCNA_00313 0.20 +1.1
327,093 + CCNA_00313 0.21 -2.5
327,101 - CCNA_00313 0.21 +1.5
327,105 + CCNA_00313 0.21 +1.2
327,127 + CCNA_00313 0.23 -1.5
327,133 + CCNA_00313 0.23 +0.8
327,186 + CCNA_00313 0.26 +0.8
327,191 + CCNA_00313 0.26 +0.2
327,204 - CCNA_00313 0.27 +1.4
327,204 - CCNA_00313 0.27 -0.8
327,206 + CCNA_00313 0.27 -0.2
327,240 + CCNA_00313 0.29 -1.1
327,254 - CCNA_00313 0.29 +0.6
327,294 + CCNA_00313 0.32 -0.5
327,302 - CCNA_00313 0.32 +1.8
327,302 - CCNA_00313 0.32 +0.8
327,302 - CCNA_00313 0.32 +1.4
327,304 + CCNA_00313 0.32 -1.2
327,312 - CCNA_00313 0.33 +0.3
327,312 - CCNA_00313 0.33 +1.4
327,341 + CCNA_00313 0.34 +1.0
327,374 - CCNA_00313 0.36 +1.0
327,518 + CCNA_00313 0.44 -0.8
327,521 - CCNA_00313 0.44 +0.8
327,521 - CCNA_00313 0.44 -2.8
327,533 + CCNA_00313 0.45 -1.7
327,541 - CCNA_00313 0.45 -1.4
327,544 - CCNA_00313 0.45 -0.4
327,571 + CCNA_00313 0.47 -1.2
327,574 - CCNA_00313 0.47 +0.7
327,579 - CCNA_00313 0.47 +0.6
327,580 - CCNA_00313 0.47 -1.0
327,595 + CCNA_00313 0.48 -0.3
327,654 + CCNA_00313 0.51 -0.1
327,683 - CCNA_00313 0.53 +0.9
327,683 - CCNA_00313 0.53 +0.2
327,707 + CCNA_00313 0.54 +2.4
327,708 + CCNA_00313 0.54 -0.5
327,708 + CCNA_00313 0.54 -0.2
327,727 + CCNA_00313 0.55 -0.0
327,729 - CCNA_00313 0.55 +0.6
327,753 - CCNA_00313 0.57 +1.1
327,789 + CCNA_00313 0.59 -0.8
327,797 - CCNA_00313 0.59 +0.5
327,797 - CCNA_00313 0.59 +0.8
327,797 - CCNA_00313 0.59 +1.4
327,797 - CCNA_00313 0.59 +0.3
327,829 - CCNA_00313 0.61 +0.8
327,842 - CCNA_00313 0.62 +1.4
327,847 - CCNA_00313 0.62 +1.2
327,863 - CCNA_00313 0.63 -0.0
327,880 + CCNA_00313 0.64 +0.5
327,880 + CCNA_00313 0.64 +0.8
327,880 + CCNA_00313 0.64 +0.1
327,880 + CCNA_00313 0.64 +1.3
327,880 + CCNA_00313 0.64 +0.4
327,880 + CCNA_00313 0.64 -1.4
327,888 - CCNA_00313 0.64 -1.0
327,888 - CCNA_00313 0.64 +1.2
327,888 - CCNA_00313 0.64 +0.1
327,888 - CCNA_00313 0.64 +1.3
327,888 - CCNA_00313 0.64 +0.3
327,888 - CCNA_00313 0.64 +1.2
327,888 - CCNA_00313 0.64 +0.4
327,888 - CCNA_00313 0.64 -0.9
327,892 + CCNA_00313 0.64 -1.2
327,957 - CCNA_00313 0.68 +0.7
327,976 + CCNA_00313 0.69 -0.7
327,999 - CCNA_00313 0.70 -0.4
328,016 + CCNA_00313 0.71 -0.7
328,021 + CCNA_00313 0.71 -1.3
328,034 - CCNA_00313 0.72 -0.1
328,042 - CCNA_00313 0.73 +0.4
328,051 - CCNA_00313 0.73 -0.0
328,060 - CCNA_00313 0.73 +0.9
328,069 + CCNA_00313 0.74 +1.2
328,095 - CCNA_00313 0.75 +1.6
328,132 - CCNA_00313 0.77 +2.2
328,165 + CCNA_00313 0.79 +0.8
328,225 - CCNA_00313 0.83 +0.8
328,225 - CCNA_00313 0.83 +1.2
328,281 + CCNA_00313 0.86 -0.2
328,289 - CCNA_00313 0.86 +0.8
328,289 - CCNA_00313 0.86 +1.5
328,294 + CCNA_00313 0.86 -1.1
328,296 - CCNA_00313 0.86 +1.6
328,302 - CCNA_00313 0.87 -1.2
328,302 - CCNA_00313 0.87 -1.7
328,315 - CCNA_00313 0.87 -1.6
328,330 + CCNA_00313 0.88 -0.2
328,363 + -1.0
328,363 + -0.4
328,371 - -1.3
328,409 - -0.2
328,414 - +1.0
328,465 + -2.0
328,473 - -1.7
328,479 + -2.4
328,479 + -0.1
328,479 + -1.2
328,479 + +1.4
328,483 - -0.7
328,487 - +1.1
328,487 - -1.9
328,487 - -3.1
328,546 + +0.2
328,568 - +1.4
328,570 - +3.4
328,601 + -1.9
328,609 - -0.2
328,618 - -0.6
328,623 - +1.8
328,688 + CCNA_00314 0.17 +0.2
328,688 + CCNA_00314 0.17 -1.7
328,743 + CCNA_00314 0.25 +0.2
328,750 - CCNA_00314 0.27 +0.1
328,753 + CCNA_00314 0.27 +1.5
328,753 + CCNA_00314 0.27 +0.3
328,753 + CCNA_00314 0.27 +2.8
328,753 + CCNA_00314 0.27 -1.9
328,758 + CCNA_00314 0.28 +1.0
328,765 + CCNA_00314 0.29 +0.8
328,773 - CCNA_00314 0.30 +0.6
328,859 + CCNA_00314 0.44 -1.5
328,926 + CCNA_00314 0.55 -3.3
328,934 - CCNA_00314 0.57 +0.5
328,954 - CCNA_00314 0.60 +0.2
328,959 - CCNA_00314 0.61 +1.3
328,961 + CCNA_00314 0.61 +1.1
328,961 + CCNA_00314 0.61 -0.8
328,969 - CCNA_00314 0.62 +0.0
328,992 + CCNA_00314 0.66 -1.4
328,992 + CCNA_00314 0.66 +0.9
328,997 + CCNA_00314 0.67 -1.4
328,997 - CCNA_00314 0.67 +0.1
329,002 + CCNA_00314 0.68 -2.4
329,003 + CCNA_00314 0.68 -2.5
329,010 - CCNA_00314 0.69 +0.1
329,010 - CCNA_00314 0.69 -0.1
329,014 + CCNA_00314 0.70 -2.1
329,019 + CCNA_00314 0.71 -1.2
329,027 - CCNA_00314 0.72 -0.8
329,050 + CCNA_00314 0.76 -0.8
329,071 + CCNA_00314 0.79 -1.0
329,074 - CCNA_00314 0.80 -1.5
329,079 - CCNA_00314 0.80 -0.0
329,094 - CCNA_00314 0.83 +0.1
329,094 - CCNA_00314 0.83 -0.5
329,096 + CCNA_00314 0.83 +3.8
329,096 + CCNA_00314 0.83 +1.8
329,104 - CCNA_00314 0.84 +0.5
329,157 - +0.7
329,217 + -0.0
329,226 - +0.8

Or see this region's nucleotide sequence