Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00260

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00259 and CCNA_00260 are separated by 251 nucleotidesCCNA_00260 and CCNA_00261 are separated by 136 nucleotides CCNA_00259: CCNA_00259 - hypothetical protein, at 271,910 to 272,620 _00259 CCNA_00260: CCNA_00260 - glutathione S-transferase, at 272,872 to 273,558 _00260 CCNA_00261: CCNA_00261 - ribonucleoside-diphosphate reductase beta chain, at 273,695 to 274,738 _00261 Position (kb) 272 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 271.877 kb on - strandat 271.877 kb on - strandat 271.878 kb on - strandat 271.910 kb on - strandat 271.918 kb on + strandat 271.918 kb on - strandat 271.926 kb on - strandat 271.927 kb on - strandat 271.970 kb on - strandat 271.978 kb on - strandat 271.978 kb on - strandat 272.004 kb on - strand, within CCNA_00259at 272.009 kb on - strand, within CCNA_00259at 272.044 kb on + strand, within CCNA_00259at 272.044 kb on + strand, within CCNA_00259at 272.049 kb on + strand, within CCNA_00259at 272.057 kb on - strand, within CCNA_00259at 272.057 kb on - strandat 272.098 kb on - strand, within CCNA_00259at 272.110 kb on + strand, within CCNA_00259at 272.110 kb on + strand, within CCNA_00259at 272.117 kb on + strand, within CCNA_00259at 272.117 kb on + strand, within CCNA_00259at 272.117 kb on + strand, within CCNA_00259at 272.125 kb on - strand, within CCNA_00259at 272.125 kb on - strand, within CCNA_00259at 272.125 kb on - strand, within CCNA_00259at 272.125 kb on - strand, within CCNA_00259at 272.129 kb on + strand, within CCNA_00259at 272.135 kb on + strand, within CCNA_00259at 272.137 kb on - strand, within CCNA_00259at 272.183 kb on + strand, within CCNA_00259at 272.188 kb on + strand, within CCNA_00259at 272.188 kb on + strand, within CCNA_00259at 272.188 kb on + strand, within CCNA_00259at 272.191 kb on - strand, within CCNA_00259at 272.191 kb on - strand, within CCNA_00259at 272.191 kb on - strand, within CCNA_00259at 272.207 kb on + strand, within CCNA_00259at 272.215 kb on - strand, within CCNA_00259at 272.255 kb on + strand, within CCNA_00259at 272.255 kb on + strand, within CCNA_00259at 272.268 kb on - strand, within CCNA_00259at 272.272 kb on - strand, within CCNA_00259at 272.296 kb on - strand, within CCNA_00259at 272.300 kb on - strand, within CCNA_00259at 272.357 kb on + strand, within CCNA_00259at 272.409 kb on + strand, within CCNA_00259at 272.448 kb on - strand, within CCNA_00259at 272.459 kb on - strand, within CCNA_00259at 272.492 kb on + strand, within CCNA_00259at 272.492 kb on + strand, within CCNA_00259at 272.511 kb on + strand, within CCNA_00259at 272.522 kb on + strand, within CCNA_00259at 272.522 kb on + strand, within CCNA_00259at 272.530 kb on - strand, within CCNA_00259at 272.530 kb on - strand, within CCNA_00259at 272.530 kb on - strand, within CCNA_00259at 272.530 kb on - strandat 272.534 kb on + strand, within CCNA_00259at 272.534 kb on + strand, within CCNA_00259at 272.535 kb on + strand, within CCNA_00259at 272.538 kb on - strand, within CCNA_00259at 272.542 kb on - strand, within CCNA_00259at 272.542 kb on - strand, within CCNA_00259at 272.543 kb on + strand, within CCNA_00259at 272.543 kb on + strand, within CCNA_00259at 272.543 kb on + strand, within CCNA_00259at 272.554 kb on - strandat 272.600 kb on - strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.602 kb on + strandat 272.605 kb on - strandat 272.607 kb on + strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.610 kb on - strandat 272.623 kb on - strandat 272.628 kb on + strandat 272.640 kb on - strandat 272.642 kb on + strandat 272.642 kb on + strandat 272.642 kb on + strandat 272.642 kb on + strandat 272.642 kb on + strandat 272.642 kb on + strandat 272.650 kb on - strandat 272.650 kb on - strandat 272.650 kb on - strandat 272.657 kb on + strandat 272.665 kb on + strandat 272.673 kb on - strandat 272.682 kb on + strandat 272.749 kb on - strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.764 kb on + strandat 272.764 kb on + strandat 272.766 kb on - strandat 272.766 kb on - strandat 272.767 kb on - strandat 272.772 kb on - strandat 272.800 kb on + strandat 272.812 kb on - strandat 272.813 kb on - strandat 272.855 kb on - strandat 272.870 kb on - strandat 272.876 kb on - strandat 272.932 kb on - strandat 272.932 kb on - strandat 272.990 kb on + strand, within CCNA_00260at 272.993 kb on + strand, within CCNA_00260at 272.993 kb on + strand, within CCNA_00260at 273.018 kb on - strand, within CCNA_00260at 273.025 kb on + strand, within CCNA_00260at 273.035 kb on - strand, within CCNA_00260at 273.046 kb on - strand, within CCNA_00260at 273.058 kb on - strand, within CCNA_00260at 273.094 kb on + strand, within CCNA_00260at 273.136 kb on - strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.173 kb on + strand, within CCNA_00260at 273.180 kb on + strand, within CCNA_00260at 273.196 kb on + strand, within CCNA_00260at 273.196 kb on + strand, within CCNA_00260at 273.196 kb on + strand, within CCNA_00260at 273.199 kb on - strand, within CCNA_00260at 273.204 kb on - strand, within CCNA_00260at 273.204 kb on - strand, within CCNA_00260at 273.209 kb on - strand, within CCNA_00260at 273.217 kb on - strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.222 kb on + strand, within CCNA_00260at 273.229 kb on - strand, within CCNA_00260at 273.246 kb on - strand, within CCNA_00260at 273.257 kb on - strand, within CCNA_00260at 273.278 kb on - strand, within CCNA_00260at 273.291 kb on - strand, within CCNA_00260at 273.293 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.366 kb on + strand, within CCNA_00260at 273.380 kb on + strand, within CCNA_00260at 273.380 kb on + strand, within CCNA_00260at 273.398 kb on - strand, within CCNA_00260at 273.419 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.435 kb on + strand, within CCNA_00260at 273.463 kb on - strand, within CCNA_00260at 273.481 kb on - strand, within CCNA_00260at 273.487 kb on + strand, within CCNA_00260at 273.493 kb on + strandat 273.495 kb on - strandat 273.533 kb on + strandat 273.541 kb on - strandat 273.546 kb on - strandat 273.593 kb on + strandat 273.605 kb on + strandat 273.647 kb on + strandat 273.654 kb on + strandat 273.692 kb on + strandat 273.692 kb on + strandat 273.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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271,877 - -1.1
271,877 - -0.0
271,878 - -0.1
271,910 - +1.1
271,918 + +0.5
271,918 - +0.9
271,926 - +0.8
271,927 - +0.6
271,970 - +1.2
271,978 - -0.8
271,978 - -2.7
272,004 - CCNA_00259 0.13 -0.4
272,009 - CCNA_00259 0.14 +3.5
272,044 + CCNA_00259 0.19 -2.5
272,044 + CCNA_00259 0.19 -0.5
272,049 + CCNA_00259 0.20 -1.5
272,057 - CCNA_00259 0.21 -1.2
272,057 - +0.2
272,098 - CCNA_00259 0.26 +0.5
272,110 + CCNA_00259 0.28 -0.4
272,110 + CCNA_00259 0.28 -3.4
272,117 + CCNA_00259 0.29 +0.2
272,117 + CCNA_00259 0.29 -1.2
272,117 + CCNA_00259 0.29 -1.9
272,125 - CCNA_00259 0.30 +1.4
272,125 - CCNA_00259 0.30 +0.7
272,125 - CCNA_00259 0.30 +0.2
272,125 - CCNA_00259 0.30 +1.2
272,129 + CCNA_00259 0.31 -0.3
272,135 + CCNA_00259 0.32 -2.7
272,137 - CCNA_00259 0.32 +0.8
272,183 + CCNA_00259 0.38 -2.7
272,188 + CCNA_00259 0.39 -2.4
272,188 + CCNA_00259 0.39 -1.5
272,188 + CCNA_00259 0.39 -1.2
272,191 - CCNA_00259 0.40 +0.0
272,191 - CCNA_00259 0.40 +1.0
272,191 - CCNA_00259 0.40 -1.1
272,207 + CCNA_00259 0.42 -1.8
272,215 - CCNA_00259 0.43 -0.7
272,255 + CCNA_00259 0.49 -1.2
272,255 + CCNA_00259 0.49 +0.5
272,268 - CCNA_00259 0.50 -2.9
272,272 - CCNA_00259 0.51 -1.3
272,296 - CCNA_00259 0.54 -0.2
272,300 - CCNA_00259 0.55 -1.6
272,357 + CCNA_00259 0.63 +0.0
272,409 + CCNA_00259 0.70 -0.6
272,448 - CCNA_00259 0.76 -0.1
272,459 - CCNA_00259 0.77 +0.2
272,492 + CCNA_00259 0.82 +0.2
272,492 + CCNA_00259 0.82 +0.2
272,511 + CCNA_00259 0.85 -1.4
272,522 + CCNA_00259 0.86 +0.7
272,522 + CCNA_00259 0.86 +0.1
272,530 - CCNA_00259 0.87 -1.2
272,530 - CCNA_00259 0.87 -1.2
272,530 - CCNA_00259 0.87 +1.4
272,530 - -0.5
272,534 + CCNA_00259 0.88 -2.0
272,534 + CCNA_00259 0.88 +0.4
272,535 + CCNA_00259 0.88 +1.5
272,538 - CCNA_00259 0.88 -0.4
272,542 - CCNA_00259 0.89 -2.0
272,542 - CCNA_00259 0.89 +1.7
272,543 + CCNA_00259 0.89 -2.1
272,543 + CCNA_00259 0.89 +1.1
272,543 + CCNA_00259 0.89 -3.0
272,554 - +0.8
272,600 - +3.1
272,602 + +0.2
272,602 + -0.2
272,602 + +0.6
272,602 + +0.0
272,602 + -1.3
272,602 + -0.4
272,602 + +0.8
272,602 + -0.2
272,602 + -2.7
272,602 + -0.2
272,602 + +1.5
272,602 + -0.1
272,602 + +0.0
272,602 + -0.5
272,602 + +0.7
272,605 - -0.5
272,607 + +1.1
272,610 - -0.1
272,610 - +0.8
272,610 - -1.3
272,610 - -1.0
272,610 - -0.5
272,610 - -0.7
272,610 - -0.3
272,610 - -0.5
272,610 - +0.2
272,610 - -0.8
272,610 - -3.4
272,610 - -1.6
272,610 - +1.0
272,623 - -0.2
272,628 + +1.8
272,640 - +0.2
272,642 + -2.0
272,642 + +0.8
272,642 + +2.1
272,642 + +0.6
272,642 + -0.7
272,642 + +0.5
272,650 - -0.2
272,650 - +1.2
272,650 - +1.3
272,657 + -0.6
272,665 + -0.3
272,673 - -0.8
272,682 + -0.9
272,749 - -0.9
272,758 + -0.0
272,758 + +1.3
272,758 + +0.5
272,764 + +0.9
272,764 + -1.0
272,766 - +0.2
272,766 - +1.6
272,767 - -1.8
272,772 - -1.9
272,800 + +2.2
272,812 - +0.3
272,813 - +1.0
272,855 - +1.0
272,870 - -1.4
272,876 - +0.4
272,932 - -0.1
272,932 - +0.2
272,990 + CCNA_00260 0.17 -2.9
272,993 + CCNA_00260 0.18 -2.1
272,993 + CCNA_00260 0.18 -1.0
273,018 - CCNA_00260 0.21 -0.5
273,025 + CCNA_00260 0.22 +2.0
273,035 - CCNA_00260 0.24 -0.5
273,046 - CCNA_00260 0.25 +0.7
273,058 - CCNA_00260 0.27 -0.5
273,094 + CCNA_00260 0.32 -0.8
273,136 - CCNA_00260 0.38 +1.9
273,161 + CCNA_00260 0.42 -0.6
273,161 + CCNA_00260 0.42 +1.0
273,169 - CCNA_00260 0.43 -0.4
273,169 - CCNA_00260 0.43 -1.6
273,169 - CCNA_00260 0.43 -1.9
273,169 - CCNA_00260 0.43 +1.1
273,173 + CCNA_00260 0.44 -1.0
273,180 + CCNA_00260 0.45 +0.2
273,196 + CCNA_00260 0.47 +0.6
273,196 + CCNA_00260 0.47 -1.7
273,196 + CCNA_00260 0.47 +0.5
273,199 - CCNA_00260 0.48 +1.1
273,204 - CCNA_00260 0.48 +1.1
273,204 - CCNA_00260 0.48 -0.9
273,209 - CCNA_00260 0.49 +1.9
273,217 - CCNA_00260 0.50 +0.2
273,221 + CCNA_00260 0.51 -1.0
273,221 + CCNA_00260 0.51 +0.2
273,221 + CCNA_00260 0.51 -1.8
273,222 + CCNA_00260 0.51 -1.6
273,229 - CCNA_00260 0.52 -0.2
273,246 - CCNA_00260 0.54 -1.7
273,257 - CCNA_00260 0.56 +1.4
273,278 - CCNA_00260 0.59 +2.1
273,291 - CCNA_00260 0.61 +0.3
273,293 - CCNA_00260 0.61 +0.6
273,348 - CCNA_00260 0.69 -1.0
273,348 - CCNA_00260 0.69 -0.1
273,348 - CCNA_00260 0.69 -0.4
273,366 + CCNA_00260 0.72 -1.3
273,380 + CCNA_00260 0.74 +0.0
273,380 + CCNA_00260 0.74 -0.4
273,398 - CCNA_00260 0.77 -1.1
273,419 + CCNA_00260 0.80 +2.4
273,425 + CCNA_00260 0.80 +0.8
273,425 + CCNA_00260 0.80 -3.3
273,425 + CCNA_00260 0.80 -0.5
273,425 + CCNA_00260 0.80 -1.0
273,425 + CCNA_00260 0.80 +2.8
273,425 + CCNA_00260 0.80 -1.4
273,425 + CCNA_00260 0.80 +0.8
273,433 - CCNA_00260 0.82 -0.4
273,433 - CCNA_00260 0.82 -2.1
273,433 - CCNA_00260 0.82 +2.3
273,433 - CCNA_00260 0.82 +1.0
273,433 - CCNA_00260 0.82 -0.8
273,433 - CCNA_00260 0.82 -2.2
273,433 - CCNA_00260 0.82 -0.9
273,433 - CCNA_00260 0.82 -1.3
273,435 + CCNA_00260 0.82 -0.1
273,463 - CCNA_00260 0.86 -0.8
273,481 - CCNA_00260 0.89 -1.5
273,487 + CCNA_00260 0.90 +1.0
273,493 + -1.4
273,495 - -0.2
273,533 + -3.2
273,541 - +0.8
273,546 - -0.4
273,593 + -1.0
273,605 + -0.7
273,647 + -0.2
273,654 + +0.1
273,692 + +1.5
273,692 + +1.9
273,692 + +0.9

Or see this region's nucleotide sequence