Experiment: R2A with D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23955 and CA265_RS23960 are separated by 255 nucleotides CA265_RS23960 and CA265_RS23965 are separated by 82 nucleotides CA265_RS23965 and CA265_RS23970 overlap by 4 nucleotides
CA265_RS23955: CA265_RS23955 - glycosyl transferase family 4, at 5,840,593 to 5,841,795
_RS23955
CA265_RS23960: CA265_RS23960 - glycine cleavage system protein T, at 5,842,051 to 5,843,130
_RS23960
CA265_RS23965: CA265_RS23965 - 2-phosphosulfolactate phosphatase, at 5,843,213 to 5,843,929
_RS23965
CA265_RS23970: CA265_RS23970 - hypothetical protein, at 5,843,926 to 5,844,843
_RS23970
Position (kb) 5842
5843
5844 Strain fitness (log2 ratio) -1
0
1
2 at 5841.103 kb on - strand, within CA265_RS23955 at 5841.174 kb on + strand, within CA265_RS23955 at 5841.175 kb on - strand, within CA265_RS23955 at 5841.177 kb on - strand, within CA265_RS23955 at 5841.245 kb on + strand, within CA265_RS23955 at 5841.245 kb on + strand, within CA265_RS23955 at 5841.245 kb on + strand, within CA265_RS23955 at 5841.246 kb on - strand, within CA265_RS23955 at 5841.340 kb on - strand, within CA265_RS23955 at 5841.352 kb on - strand, within CA265_RS23955 at 5841.367 kb on - strand, within CA265_RS23955 at 5841.383 kb on - strand, within CA265_RS23955 at 5841.538 kb on - strand, within CA265_RS23955 at 5841.579 kb on + strand, within CA265_RS23955 at 5841.579 kb on + strand, within CA265_RS23955 at 5841.681 kb on + strand at 5841.798 kb on - strand at 5841.801 kb on + strand at 5841.801 kb on + strand at 5841.896 kb on - strand at 5841.996 kb on - strand at 5841.996 kb on - strand at 5841.996 kb on - strand at 5841.996 kb on - strand at 5842.006 kb on - strand at 5842.009 kb on - strand at 5842.193 kb on + strand, within CA265_RS23960 at 5842.555 kb on - strand, within CA265_RS23960 at 5842.860 kb on - strand, within CA265_RS23960 at 5843.170 kb on - strand at 5843.177 kb on + strand at 5843.262 kb on - strand at 5843.268 kb on + strand at 5843.927 kb on + strand at 5843.941 kb on + strand at 5843.941 kb on + strand at 5843.948 kb on - strand at 5843.950 kb on + strand at 5843.950 kb on + strand at 5843.951 kb on - strand at 5843.951 kb on - strand at 5843.982 kb on + strand at 5844.018 kb on - strand, within CA265_RS23970 at 5844.028 kb on + strand, within CA265_RS23970 at 5844.039 kb on - strand, within CA265_RS23970 at 5844.039 kb on - strand, within CA265_RS23970 at 5844.039 kb on - strand, within CA265_RS23970 at 5844.063 kb on - strand, within CA265_RS23970 at 5844.063 kb on - strand, within CA265_RS23970 at 5844.067 kb on - strand, within CA265_RS23970
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.12 mg/ml remove 5,841,103 - CA265_RS23955 0.42 +0.8 5,841,174 + CA265_RS23955 0.48 +0.3 5,841,175 - CA265_RS23955 0.48 -0.4 5,841,177 - CA265_RS23955 0.49 -0.2 5,841,245 + CA265_RS23955 0.54 -0.2 5,841,245 + CA265_RS23955 0.54 -1.1 5,841,245 + CA265_RS23955 0.54 +0.4 5,841,246 - CA265_RS23955 0.54 +0.1 5,841,340 - CA265_RS23955 0.62 +0.5 5,841,352 - CA265_RS23955 0.63 +0.2 5,841,367 - CA265_RS23955 0.64 -0.3 5,841,383 - CA265_RS23955 0.66 -0.4 5,841,538 - CA265_RS23955 0.79 +0.9 5,841,579 + CA265_RS23955 0.82 -0.4 5,841,579 + CA265_RS23955 0.82 +0.5 5,841,681 + -0.8 5,841,798 - -0.3 5,841,801 + -0.1 5,841,801 + +0.4 5,841,896 - -0.5 5,841,996 - +0.7 5,841,996 - +2.1 5,841,996 - +0.5 5,841,996 - +0.1 5,842,006 - +1.3 5,842,009 - +1.6 5,842,193 + CA265_RS23960 0.13 +0.8 5,842,555 - CA265_RS23960 0.47 -1.7 5,842,860 - CA265_RS23960 0.75 +1.4 5,843,170 - +0.9 5,843,177 + +0.6 5,843,262 - -0.3 5,843,268 + +0.9 5,843,927 + +0.5 5,843,941 + +0.3 5,843,941 + +1.1 5,843,948 - -0.3 5,843,950 + -0.0 5,843,950 + -0.1 5,843,951 - +0.3 5,843,951 - +0.3 5,843,982 + -0.7 5,844,018 - CA265_RS23970 0.10 +1.1 5,844,028 + CA265_RS23970 0.11 +0.3 5,844,039 - CA265_RS23970 0.12 +0.7 5,844,039 - CA265_RS23970 0.12 +0.6 5,844,039 - CA265_RS23970 0.12 -0.0 5,844,063 - CA265_RS23970 0.15 -0.4 5,844,063 - CA265_RS23970 0.15 -0.9 5,844,067 - CA265_RS23970 0.15 -0.2
Or see this region's nucleotide sequence