Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21910

Experiment: R2A with D-Cycloserine 0.12 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.12 mg/ml
5,382,329	-		CA265_RS21905	0.16	+1.3
5,382,347	-		CA265_RS21905	0.18	+0.2
5,382,421	-		CA265_RS21905	0.26	+0.3
5,382,569	+		CA265_RS21905	0.42	-0.4
5,382,620	+		CA265_RS21905	0.48	+0.1
5,382,635	-		CA265_RS21905	0.50	+0.4
5,382,691	+		CA265_RS21905	0.56	+0.4
5,382,817	+		CA265_RS21905	0.70	-0.2
5,382,955	+		CA265_RS21905	0.85	+1.3
5,382,955	+		CA265_RS21905	0.85	-0.7
5,383,002	+				-0.3
5,383,002	+				+1.7
5,383,020	-				-0.0
5,383,061	-				+0.3
5,383,070	-				+0.3
5,383,094	+				+0.4
5,383,119	+				-1.2
5,383,122	+				+0.7
5,383,140	-				-0.0
5,383,144	-				+0.6
5,383,168	-				-1.0
5,383,233	+				+0.4
5,383,296	-				-0.1
5,383,338	-				+0.4
5,383,340	+				-0.1
5,383,346	-				+0.2
5,383,346	-				-0.2
5,383,346	-				+0.1
5,383,348	-				+0.4
5,383,348	-				-0.2
5,383,395	+				+0.9
5,383,395	+				-1.0
5,383,419	+				+0.7
5,383,501	-		CA265_RS21910	0.13	+0.6
5,383,501	-		CA265_RS21910	0.13	+0.2
5,383,524	+		CA265_RS21910	0.15	+0.5
5,383,525	-		CA265_RS21910	0.15	-0.3
5,383,610	+		CA265_RS21910	0.20	+0.5
5,383,711	-		CA265_RS21910	0.27	+0.3
5,383,818	-		CA265_RS21910	0.34	+0.5
5,383,826	-		CA265_RS21910	0.34	+0.5
5,383,826	-		CA265_RS21910	0.34	+2.2
5,383,827	+		CA265_RS21910	0.34	+0.3
5,383,828	-		CA265_RS21910	0.34	-0.1
5,383,862	-		CA265_RS21910	0.37	+1.0
5,383,862	-		CA265_RS21910	0.37	+1.2
5,383,904	-		CA265_RS21910	0.39	+1.2
5,383,905	+		CA265_RS21910	0.39	+0.1
5,383,910	+		CA265_RS21910	0.40	-0.1
5,383,951	+		CA265_RS21910	0.42	-0.7
5,383,951	+		CA265_RS21910	0.42	+0.2
5,384,025	+		CA265_RS21910	0.47	-0.2
5,384,026	-		CA265_RS21910	0.47	+0.5
5,384,029	-		CA265_RS21910	0.47	+0.6
5,384,092	+		CA265_RS21910	0.51	+1.5
5,384,092	+		CA265_RS21910	0.51	+1.3
5,384,135	-		CA265_RS21910	0.54	-0.0
5,384,160	+		CA265_RS21910	0.56	+2.0
5,384,161	-		CA265_RS21910	0.56	+0.6
5,384,184	-		CA265_RS21910	0.57	+0.6
5,384,188	+		CA265_RS21910	0.58	+0.7
5,384,265	+		CA265_RS21910	0.63	+0.2
5,384,265	+		CA265_RS21910	0.63	-0.3
5,384,287	+		CA265_RS21910	0.64	+0.1
5,384,288	-		CA265_RS21910	0.64	+0.3
5,384,289	+		CA265_RS21910	0.64	+1.0
5,384,290	-		CA265_RS21910	0.64	+0.3
5,384,305	+		CA265_RS21910	0.65	+1.0
5,384,305	+		CA265_RS21910	0.65	+1.1
5,384,306	-		CA265_RS21910	0.65	+0.7
5,384,371	+		CA265_RS21910	0.70	+0.7
5,384,371	+		CA265_RS21910	0.70	-0.9
5,384,430	+		CA265_RS21910	0.73	+0.4
5,384,430	+		CA265_RS21910	0.73	+0.7
5,384,476	-		CA265_RS21910	0.76	+0.7
5,384,479	+		CA265_RS21910	0.77	+0.9
5,384,479	+		CA265_RS21910	0.77	-0.6
5,384,479	+		CA265_RS21910	0.77	+0.1
5,384,570	+		CA265_RS21910	0.82	-0.1
5,384,571	-		CA265_RS21910	0.82	+0.7
5,384,571	-		CA265_RS21910	0.82	+2.3
5,384,635	+		CA265_RS21910	0.87	-0.1
5,384,689	-				-0.0
5,384,694	-				+0.7
5,384,733	-				+1.1
5,384,751	+				+0.3
5,384,752	-				+0.2
5,384,840	-				+0.5
5,384,850	-				+0.3
5,384,904	+				-0.0
5,384,905	-				-0.3
5,384,905	-				+0.4
5,384,905	-				+1.1
5,384,958	+		CA265_RS21915	0.11	+2.2
5,385,009	+		CA265_RS21915	0.16	-0.2
5,385,010	-		CA265_RS21915	0.16	+0.4
5,385,010	-		CA265_RS21915	0.16	+0.9
5,385,016	-		CA265_RS21915	0.16	+0.3
5,385,087	+		CA265_RS21915	0.23	+0.0
5,385,133	-		CA265_RS21915	0.28	-0.2
5,385,136	-		CA265_RS21915	0.28	+0.7
5,385,213	+		CA265_RS21915	0.36	-0.1
5,385,214	-		CA265_RS21915	0.36	-0.1
5,385,217	-		CA265_RS21915	0.36	-0.4
5,385,227	-		CA265_RS21915	0.37	+0.3
5,385,230	-		CA265_RS21915	0.37	+0.6
5,385,271	+		CA265_RS21915	0.41	-0.5
5,385,283	-		CA265_RS21915	0.43	+0.8
5,385,286	+		CA265_RS21915	0.43	+0.2
5,385,291	+		CA265_RS21915	0.43	+0.8
5,385,361	-		CA265_RS21915	0.50	+0.0
5,385,409	+		CA265_RS21915	0.55	+0.9
5,385,430	+		CA265_RS21915	0.57	+0.2
5,385,431	-		CA265_RS21915	0.57	-0.0
5,385,431	-		CA265_RS21915	0.57	+0.7
5,385,431	-		CA265_RS21915	0.57	+0.1
5,385,432	+		CA265_RS21915	0.57	+0.6
5,385,432	+		CA265_RS21915	0.57	+0.4
5,385,454	-		CA265_RS21915	0.59	+0.5
5,385,515	-		CA265_RS21915	0.65	-0.6
5,385,538	+		CA265_RS21915	0.67	+0.4
5,385,539	-		CA265_RS21915	0.68	+0.6
5,385,547	+		CA265_RS21915	0.68	-0.3
5,385,548	-		CA265_RS21915	0.68	-0.2
5,385,579	-		CA265_RS21915	0.71	+1.8
5,385,582	+		CA265_RS21915	0.72	+0.1
5,385,622	-		CA265_RS21915	0.76	+0.3
5,385,633	+		CA265_RS21915	0.77	+1.8
5,385,634	-		CA265_RS21915	0.77	+0.0
5,385,634	-		CA265_RS21915	0.77	-0.6
5,385,634	-		CA265_RS21915	0.77	+0.3
5,385,655	+		CA265_RS21915	0.79	-0.0
5,385,656	-		CA265_RS21915	0.79	-0.5
5,385,671	-		CA265_RS21915	0.80	+0.1
5,385,671	-		CA265_RS21915	0.80	-0.0
5,385,671	-		CA265_RS21915	0.80	+0.4
5,385,718	-		CA265_RS21915	0.85	-3.5
5,385,795	+				-1.3
5,385,818	-				+1.0
5,385,826	-				-0.1
5,385,841	+				+1.6