Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08945

Experiment: R2A with D-Cycloserine 0.12 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.12 mg/ml
2,231,534	+				-1.3
2,231,539	+				-1.2
2,231,565	-				-0.3
2,231,565	-				-1.0
2,231,583	-				-0.7
2,231,684	-				-0.6
2,231,692	+				+0.7
2,231,723	+				-0.1
2,231,728	-				+0.2
2,231,728	-				+0.1
2,231,809	-		CA265_RS08935	0.31	+0.5
2,231,913	+		CA265_RS08935	0.62	-0.8
2,231,913	+		CA265_RS08935	0.62	-0.3
2,231,913	+		CA265_RS08935	0.62	-1.0
2,231,953	+		CA265_RS08935	0.74	-0.2
2,231,953	+		CA265_RS08935	0.74	+0.4
2,231,954	-		CA265_RS08935	0.74	+0.3
2,231,995	+		CA265_RS08935	0.87	+0.0
2,231,996	-		CA265_RS08935	0.87	-0.7
2,231,996	-		CA265_RS08935	0.87	-0.6
2,232,173	+		CA265_RS08940	0.17	+0.2
2,232,174	-		CA265_RS08940	0.17	+0.3
2,232,175	+		CA265_RS08940	0.18	-0.3
2,232,196	+		CA265_RS08940	0.23	-0.7
2,232,196	+		CA265_RS08940	0.23	-0.3
2,232,196	+		CA265_RS08940	0.23	-0.3
2,232,196	+		CA265_RS08940	0.23	-0.5
2,232,197	-		CA265_RS08940	0.23	+0.3
2,232,197	-		CA265_RS08940	0.23	+0.4
2,232,197	-		CA265_RS08940	0.23	+0.3
2,232,197	-		CA265_RS08940	0.23	-0.7
2,232,199	+		CA265_RS08940	0.23	-0.2
2,232,199	+		CA265_RS08940	0.23	-0.2
2,232,220	-		CA265_RS08940	0.28	+0.3
2,232,222	+		CA265_RS08940	0.29	+0.5
2,232,304	+		CA265_RS08940	0.48	-1.8
2,232,305	-		CA265_RS08940	0.49	-0.3
2,232,405	+		CA265_RS08940	0.72	-0.1
2,232,405	+		CA265_RS08940	0.72	+0.2
2,232,407	+				+1.1
2,232,407	+		CA265_RS08940	0.73	-0.4
2,232,407	+		CA265_RS08940	0.73	+0.1
2,232,432	-		CA265_RS08940	0.79	-0.8
2,232,454	-		CA265_RS08940	0.84	+0.2
2,232,476	-		CA265_RS08940	0.89	+1.3
2,232,507	-				+0.6
2,232,562	+		CA265_RS08945	0.15	-0.2
2,232,594	-		CA265_RS08945	0.27	-1.8
2,232,614	-		CA265_RS08945	0.34	-0.2
2,232,617	+		CA265_RS08945	0.36	-1.1
2,232,654	+		CA265_RS08945	0.50	+0.5
2,232,677	+		CA265_RS08945	0.59	-0.3
2,232,689	+		CA265_RS08945	0.63	-0.6
2,232,701	+		CA265_RS08945	0.68	-0.4
2,232,707	-		CA265_RS08945	0.70	-1.5
2,232,707	-		CA265_RS08945	0.70	-1.2
2,232,765	-				+0.0
2,232,930	+				-0.9
2,232,945	+				+0.4
2,232,945	+				-0.3