Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02610

Experiment: R2A with D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02605 and CA265_RS02610 are separated by 71 nucleotidesCA265_RS02610 and CA265_RS02615 are separated by 593 nucleotides CA265_RS02605: CA265_RS02605 - hypothetical protein, at 657,382 to 658,389 _RS02605 CA265_RS02610: CA265_RS02610 - DNA-binding response regulator, at 658,461 to 659,195 _RS02610 CA265_RS02615: CA265_RS02615 - hypothetical protein, at 659,789 to 660,256 _RS02615 Position (kb) 658 659 660Strain fitness (log2 ratio) -2 -1 0 1 2at 657.477 kb on + strandat 657.495 kb on + strand, within CA265_RS02605at 657.496 kb on - strand, within CA265_RS02605at 657.538 kb on + strand, within CA265_RS02605at 657.542 kb on + strand, within CA265_RS02605at 657.542 kb on + strand, within CA265_RS02605at 657.543 kb on - strand, within CA265_RS02605at 657.543 kb on - strand, within CA265_RS02605at 657.659 kb on + strand, within CA265_RS02605at 657.660 kb on - strand, within CA265_RS02605at 657.683 kb on - strand, within CA265_RS02605at 657.685 kb on - strand, within CA265_RS02605at 657.709 kb on + strand, within CA265_RS02605at 657.727 kb on + strand, within CA265_RS02605at 657.771 kb on + strand, within CA265_RS02605at 657.772 kb on - strand, within CA265_RS02605at 657.879 kb on + strand, within CA265_RS02605at 657.879 kb on + strand, within CA265_RS02605at 657.887 kb on + strand, within CA265_RS02605at 657.888 kb on - strand, within CA265_RS02605at 657.893 kb on - strand, within CA265_RS02605at 657.893 kb on - strand, within CA265_RS02605at 657.899 kb on - strand, within CA265_RS02605at 657.910 kb on - strand, within CA265_RS02605at 657.945 kb on - strand, within CA265_RS02605at 657.982 kb on - strand, within CA265_RS02605at 657.993 kb on + strand, within CA265_RS02605at 658.004 kb on + strand, within CA265_RS02605at 658.004 kb on + strand, within CA265_RS02605at 658.017 kb on - strand, within CA265_RS02605at 658.033 kb on + strand, within CA265_RS02605at 658.033 kb on + strand, within CA265_RS02605at 658.047 kb on + strand, within CA265_RS02605at 658.152 kb on + strand, within CA265_RS02605at 658.167 kb on - strand, within CA265_RS02605at 658.201 kb on - strand, within CA265_RS02605at 658.236 kb on + strand, within CA265_RS02605at 658.287 kb on - strand, within CA265_RS02605at 658.291 kb on - strandat 658.356 kb on + strandat 658.356 kb on + strandat 658.356 kb on + strandat 658.402 kb on - strandat 658.460 kb on + strandat 658.460 kb on + strandat 658.495 kb on - strandat 658.505 kb on + strandat 658.506 kb on - strandat 658.508 kb on + strandat 658.581 kb on - strand, within CA265_RS02610at 658.622 kb on + strand, within CA265_RS02610at 658.624 kb on + strand, within CA265_RS02610at 658.624 kb on + strand, within CA265_RS02610at 658.624 kb on + strand, within CA265_RS02610at 658.624 kb on + strand, within CA265_RS02610at 658.625 kb on - strand, within CA265_RS02610at 658.673 kb on + strand, within CA265_RS02610at 658.741 kb on + strand, within CA265_RS02610at 658.742 kb on - strand, within CA265_RS02610at 658.754 kb on + strand, within CA265_RS02610at 658.755 kb on - strand, within CA265_RS02610at 658.755 kb on - strand, within CA265_RS02610at 658.768 kb on - strand, within CA265_RS02610at 658.843 kb on + strand, within CA265_RS02610at 658.917 kb on - strand, within CA265_RS02610at 658.921 kb on - strand, within CA265_RS02610at 658.929 kb on - strand, within CA265_RS02610at 658.929 kb on - strand, within CA265_RS02610at 658.933 kb on + strand, within CA265_RS02610at 658.933 kb on + strand, within CA265_RS02610at 658.936 kb on - strand, within CA265_RS02610at 658.937 kb on + strand, within CA265_RS02610at 658.937 kb on + strand, within CA265_RS02610at 658.937 kb on + strand, within CA265_RS02610at 658.938 kb on - strand, within CA265_RS02610at 658.938 kb on - strand, within CA265_RS02610at 658.939 kb on + strand, within CA265_RS02610at 658.939 kb on + strand, within CA265_RS02610at 658.991 kb on + strand, within CA265_RS02610at 658.995 kb on + strand, within CA265_RS02610at 659.055 kb on - strand, within CA265_RS02610at 659.055 kb on - strand, within CA265_RS02610at 659.061 kb on + strand, within CA265_RS02610at 659.064 kb on - strand, within CA265_RS02610at 659.064 kb on - strand, within CA265_RS02610at 659.147 kb on + strandat 659.269 kb on - strandat 659.367 kb on + strandat 659.368 kb on - strandat 659.419 kb on + strandat 659.420 kb on - strandat 659.444 kb on - strandat 659.444 kb on - strandat 659.490 kb on + strandat 659.503 kb on - strandat 659.543 kb on - strandat 659.565 kb on + strandat 659.575 kb on - strandat 659.644 kb on - strandat 659.672 kb on - strandat 659.712 kb on - strandat 659.722 kb on + strandat 659.723 kb on - strandat 659.848 kb on + strand, within CA265_RS02615at 659.849 kb on - strand, within CA265_RS02615at 659.958 kb on + strand, within CA265_RS02615at 659.991 kb on - strand, within CA265_RS02615at 659.991 kb on - strand, within CA265_RS02615at 660.045 kb on + strand, within CA265_RS02615at 660.045 kb on + strand, within CA265_RS02615at 660.068 kb on - strand, within CA265_RS02615at 660.153 kb on - strand, within CA265_RS02615

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.12 mg/ml
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657,477 + -0.9
657,495 + CA265_RS02605 0.11 -0.5
657,496 - CA265_RS02605 0.11 -0.6
657,538 + CA265_RS02605 0.15 -1.3
657,542 + CA265_RS02605 0.16 +0.5
657,542 + CA265_RS02605 0.16 -0.0
657,543 - CA265_RS02605 0.16 +0.1
657,543 - CA265_RS02605 0.16 -0.4
657,659 + CA265_RS02605 0.27 -0.8
657,660 - CA265_RS02605 0.28 -0.4
657,683 - CA265_RS02605 0.30 -0.3
657,685 - CA265_RS02605 0.30 +0.6
657,709 + CA265_RS02605 0.32 -1.0
657,727 + CA265_RS02605 0.34 +0.1
657,771 + CA265_RS02605 0.39 -1.0
657,772 - CA265_RS02605 0.39 +0.1
657,879 + CA265_RS02605 0.49 -0.0
657,879 + CA265_RS02605 0.49 -0.2
657,887 + CA265_RS02605 0.50 +0.1
657,888 - CA265_RS02605 0.50 -0.3
657,893 - CA265_RS02605 0.51 +0.1
657,893 - CA265_RS02605 0.51 +0.1
657,899 - CA265_RS02605 0.51 -0.2
657,910 - CA265_RS02605 0.52 -1.0
657,945 - CA265_RS02605 0.56 -0.1
657,982 - CA265_RS02605 0.60 +0.3
657,993 + CA265_RS02605 0.61 +1.9
658,004 + CA265_RS02605 0.62 -0.5
658,004 + CA265_RS02605 0.62 -0.3
658,017 - CA265_RS02605 0.63 +0.8
658,033 + CA265_RS02605 0.65 -0.6
658,033 + CA265_RS02605 0.65 -0.8
658,047 + CA265_RS02605 0.66 -0.3
658,152 + CA265_RS02605 0.76 -1.0
658,167 - CA265_RS02605 0.78 +0.1
658,201 - CA265_RS02605 0.81 +0.3
658,236 + CA265_RS02605 0.85 +0.6
658,287 - CA265_RS02605 0.90 +0.4
658,291 - -0.8
658,356 + +0.4
658,356 + -0.2
658,356 + +0.0
658,402 - -0.2
658,460 + +0.3
658,460 + -0.9
658,495 - +0.9
658,505 + -0.6
658,506 - +0.1
658,508 + -0.5
658,581 - CA265_RS02610 0.16 -0.9
658,622 + CA265_RS02610 0.22 -0.7
658,624 + CA265_RS02610 0.22 -0.1
658,624 + CA265_RS02610 0.22 -0.0
658,624 + CA265_RS02610 0.22 -0.2
658,624 + CA265_RS02610 0.22 +0.1
658,625 - CA265_RS02610 0.22 +0.7
658,673 + CA265_RS02610 0.29 -0.1
658,741 + CA265_RS02610 0.38 +0.1
658,742 - CA265_RS02610 0.38 +0.5
658,754 + CA265_RS02610 0.40 -0.4
658,755 - CA265_RS02610 0.40 -0.3
658,755 - CA265_RS02610 0.40 -0.8
658,768 - CA265_RS02610 0.42 -1.1
658,843 + CA265_RS02610 0.52 -0.4
658,917 - CA265_RS02610 0.62 -0.4
658,921 - CA265_RS02610 0.63 +0.4
658,929 - CA265_RS02610 0.64 -0.5
658,929 - CA265_RS02610 0.64 -0.1
658,933 + CA265_RS02610 0.64 -0.3
658,933 + CA265_RS02610 0.64 +0.1
658,936 - CA265_RS02610 0.65 -0.1
658,937 + CA265_RS02610 0.65 -0.9
658,937 + CA265_RS02610 0.65 -0.4
658,937 + CA265_RS02610 0.65 +0.6
658,938 - CA265_RS02610 0.65 -0.5
658,938 - CA265_RS02610 0.65 -0.4
658,939 + CA265_RS02610 0.65 -0.2
658,939 + CA265_RS02610 0.65 -1.6
658,991 + CA265_RS02610 0.72 -0.2
658,995 + CA265_RS02610 0.73 -1.4
659,055 - CA265_RS02610 0.81 -0.3
659,055 - CA265_RS02610 0.81 -0.1
659,061 + CA265_RS02610 0.82 +1.3
659,064 - CA265_RS02610 0.82 +0.1
659,064 - CA265_RS02610 0.82 +0.4
659,147 + +0.2
659,269 - +0.9
659,367 + +1.8
659,368 - +0.4
659,419 + +0.7
659,420 - +0.5
659,444 - -0.7
659,444 - -0.2
659,490 + -1.0
659,503 - +0.9
659,543 - -0.1
659,565 + +0.3
659,575 - -0.6
659,644 - -2.0
659,672 - +0.2
659,712 - -2.3
659,722 + +0.2
659,723 - -0.2
659,848 + CA265_RS02615 0.13 -0.5
659,849 - CA265_RS02615 0.13 -0.1
659,958 + CA265_RS02615 0.36 -0.1
659,991 - CA265_RS02615 0.43 +0.8
659,991 - CA265_RS02615 0.43 -0.4
660,045 + CA265_RS02615 0.55 -0.9
660,045 + CA265_RS02615 0.55 -0.1
660,068 - CA265_RS02615 0.60 -1.2
660,153 - CA265_RS02615 0.78 +0.2

Or see this region's nucleotide sequence