Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_513

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_511 and Ac3H11_512 are separated by 325 nucleotidesAc3H11_512 and Ac3H11_513 are separated by 85 nucleotidesAc3H11_513 and Ac3H11_514 are separated by 255 nucleotides Ac3H11_511 - FIG00933650: hypothetical protein, at 210,169 to 210,975 _511 Ac3H11_512 - Positive regulator of CheA protein activity (CheW), at 211,301 to 211,840 _512 Ac3H11_513 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 211,926 to 213,914 _513 Ac3H11_514 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 214,170 to 215,948 _514 Position (kb) 211 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.182 kb on - strandat 211.201 kb on + strandat 211.202 kb on - strandat 211.202 kb on - strandat 211.202 kb on - strandat 211.251 kb on + strandat 211.251 kb on + strandat 211.391 kb on + strand, within Ac3H11_512at 211.391 kb on + strand, within Ac3H11_512at 211.391 kb on + strand, within Ac3H11_512at 211.392 kb on - strand, within Ac3H11_512at 211.421 kb on + strand, within Ac3H11_512at 211.422 kb on - strand, within Ac3H11_512at 211.460 kb on + strand, within Ac3H11_512at 211.460 kb on + strand, within Ac3H11_512at 211.580 kb on + strand, within Ac3H11_512at 211.580 kb on + strand, within Ac3H11_512at 211.581 kb on - strand, within Ac3H11_512at 211.581 kb on - strand, within Ac3H11_512at 211.581 kb on - strand, within Ac3H11_512at 211.581 kb on - strand, within Ac3H11_512at 211.809 kb on + strandat 211.809 kb on + strandat 211.810 kb on - strandat 211.810 kb on - strandat 211.810 kb on - strandat 211.810 kb on - strandat 211.810 kb on - strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.839 kb on - strandat 211.839 kb on - strandat 211.839 kb on - strandat 212.313 kb on + strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.395 kb on - strand, within Ac3H11_513at 212.395 kb on - strand, within Ac3H11_513at 212.395 kb on - strand, within Ac3H11_513at 212.425 kb on - strand, within Ac3H11_513at 214.080 kb on + strandat 214.081 kb on - strandat 214.103 kb on + strandat 214.104 kb on - strandat 214.296 kb on + strandat 214.296 kb on + strandat 214.296 kb on + strandat 214.297 kb on - strandat 214.297 kb on - strandat 214.297 kb on - strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.464 kb on + strand, within Ac3H11_514at 214.580 kb on + strand, within Ac3H11_514at 214.580 kb on + strand, within Ac3H11_514at 214.580 kb on + strand, within Ac3H11_514at 214.581 kb on - strand, within Ac3H11_514at 214.581 kb on - strand, within Ac3H11_514at 214.581 kb on - strand, within Ac3H11_514at 214.599 kb on + strand, within Ac3H11_514at 214.599 kb on + strand, within Ac3H11_514at 214.599 kb on + strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.618 kb on - strand, within Ac3H11_514at 214.618 kb on - strand, within Ac3H11_514at 214.618 kb on - strand, within Ac3H11_514at 214.693 kb on - strand, within Ac3H11_514at 214.693 kb on - strand, within Ac3H11_514at 214.693 kb on - strand, within Ac3H11_514

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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211,071 + +0.1
211,071 + +0.4
211,071 + -1.6
211,071 + -1.3
211,071 + -0.1
211,071 + -1.0
211,071 + +0.1
211,071 + +0.2
211,072 - -0.1
211,072 - +1.2
211,072 - -0.5
211,072 - -0.5
211,072 - -0.4
211,072 - +0.4
211,072 - -0.6
211,072 - -0.6
211,072 - +0.3
211,072 - -0.0
211,182 - +0.2
211,201 + -0.5
211,202 - +0.6
211,202 - -0.9
211,202 - -0.6
211,251 + +0.0
211,251 + +0.1
211,391 + Ac3H11_512 0.17 +0.2
211,391 + Ac3H11_512 0.17 -0.3
211,391 + Ac3H11_512 0.17 +0.8
211,392 - Ac3H11_512 0.17 +0.4
211,421 + Ac3H11_512 0.22 +0.3
211,422 - Ac3H11_512 0.22 -0.2
211,460 + Ac3H11_512 0.29 -0.0
211,460 + Ac3H11_512 0.29 +0.4
211,580 + Ac3H11_512 0.52 +0.7
211,580 + Ac3H11_512 0.52 +0.3
211,581 - Ac3H11_512 0.52 +0.0
211,581 - Ac3H11_512 0.52 +0.5
211,581 - Ac3H11_512 0.52 +0.4
211,581 - Ac3H11_512 0.52 -0.2
211,809 + +0.2
211,809 + -0.7
211,810 - -0.3
211,810 - +1.0
211,810 - -0.4
211,810 - -0.3
211,810 - +1.0
211,838 + +1.2
211,838 + -0.0
211,838 + -0.9
211,838 + +0.7
211,838 + +0.0
211,838 + -0.2
211,839 - -0.7
211,839 - +0.2
211,839 - -0.5
212,313 + Ac3H11_513 0.19 +0.4
212,314 - Ac3H11_513 0.20 +0.3
212,314 - Ac3H11_513 0.20 +0.1
212,314 - Ac3H11_513 0.20 +0.5
212,314 - Ac3H11_513 0.20 +0.8
212,314 - Ac3H11_513 0.20 -0.1
212,395 - Ac3H11_513 0.24 -0.9
212,395 - Ac3H11_513 0.24 +0.1
212,395 - Ac3H11_513 0.24 +0.4
212,425 - Ac3H11_513 0.25 -0.2
214,080 + +0.3
214,081 - +0.3
214,103 + -0.2
214,104 - -1.5
214,296 + -0.1
214,296 + +0.3
214,296 + -0.6
214,297 - -0.3
214,297 - -0.0
214,297 - +0.3
214,347 + -2.0
214,347 + +0.4
214,347 + -0.4
214,347 + +0.8
214,347 + +0.3
214,347 + +0.5
214,348 - Ac3H11_514 0.10 -0.4
214,348 - Ac3H11_514 0.10 -0.0
214,348 - Ac3H11_514 0.10 -0.3
214,348 - Ac3H11_514 0.10 -0.0
214,348 - Ac3H11_514 0.10 -1.0
214,348 - Ac3H11_514 0.10 +0.3
214,348 - Ac3H11_514 0.10 -0.2
214,348 - Ac3H11_514 0.10 -0.6
214,348 - Ac3H11_514 0.10 -1.1
214,348 - Ac3H11_514 0.10 +1.1
214,348 - Ac3H11_514 0.10 +0.2
214,464 + Ac3H11_514 0.17 +0.4
214,580 + Ac3H11_514 0.23 +0.7
214,580 + Ac3H11_514 0.23 -0.8
214,580 + Ac3H11_514 0.23 -0.1
214,581 - Ac3H11_514 0.23 +1.1
214,581 - Ac3H11_514 0.23 +1.1
214,581 - Ac3H11_514 0.23 -0.3
214,599 + Ac3H11_514 0.24 -0.5
214,599 + Ac3H11_514 0.24 -0.3
214,599 + Ac3H11_514 0.24 +1.8
214,600 - Ac3H11_514 0.24 +0.4
214,600 - Ac3H11_514 0.24 -0.4
214,600 - Ac3H11_514 0.24 +0.4
214,600 - Ac3H11_514 0.24 -0.2
214,600 - Ac3H11_514 0.24 +1.6
214,618 - Ac3H11_514 0.25 +0.7
214,618 - Ac3H11_514 0.25 -0.3
214,618 - Ac3H11_514 0.25 -0.3
214,693 - Ac3H11_514 0.29 +0.6
214,693 - Ac3H11_514 0.29 -1.5
214,693 - Ac3H11_514 0.29 +0.5

Or see this region's nucleotide sequence