Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1805

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1804 and Ac3H11_1805 are separated by 27 nucleotidesAc3H11_1805 and Ac3H11_1806 are separated by 60 nucleotides Ac3H11_1804 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 24,654 to 25,802 _1804 Ac3H11_1805 - Adenylosuccinate synthetase (EC 6.3.4.4), at 25,830 to 27,206 _1805 Ac3H11_1806 - Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22), at 27,267 to 27,791 _1806 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2 3at 27.192 kb on + strandat 27.192 kb on + strandat 27.192 kb on + strandat 27.192 kb on + strandat 27.192 kb on + strandat 27.192 kb on + strandat 27.192 kb on + strandat 27.192 kb on + strandat 27.193 kb on - strandat 27.193 kb on - strandat 27.193 kb on - strandat 27.205 kb on - strandat 27.236 kb on + strandat 27.236 kb on + strandat 27.294 kb on + strandat 27.294 kb on + strandat 27.294 kb on + strandat 27.295 kb on - strandat 27.295 kb on - strandat 27.295 kb on - strandat 27.295 kb on - strandat 27.303 kb on + strandat 27.303 kb on + strandat 27.303 kb on + strandat 27.304 kb on - strandat 27.313 kb on - strandat 27.371 kb on + strand, within Ac3H11_1806at 27.371 kb on + strand, within Ac3H11_1806at 27.435 kb on - strand, within Ac3H11_1806at 27.465 kb on + strandat 27.465 kb on + strand, within Ac3H11_1806at 27.610 kb on + strand, within Ac3H11_1806at 27.610 kb on + strand, within Ac3H11_1806at 27.610 kb on + strand, within Ac3H11_1806at 27.611 kb on - strand, within Ac3H11_1806at 27.611 kb on - strand, within Ac3H11_1806at 27.611 kb on - strand, within Ac3H11_1806at 27.611 kb on - strand, within Ac3H11_1806at 27.611 kb on - strand, within Ac3H11_1806at 27.611 kb on - strand, within Ac3H11_1806at 27.621 kb on + strand, within Ac3H11_1806at 27.621 kb on + strand, within Ac3H11_1806at 27.621 kb on + strand, within Ac3H11_1806at 27.621 kb on + strand, within Ac3H11_1806at 27.621 kb on + strand, within Ac3H11_1806at 27.621 kb on + strand, within Ac3H11_1806at 27.621 kb on + strand, within Ac3H11_1806at 27.621 kb on + strand, within Ac3H11_1806at 27.622 kb on - strand, within Ac3H11_1806at 27.622 kb on - strand, within Ac3H11_1806at 27.622 kb on - strand, within Ac3H11_1806at 27.622 kb on - strand, within Ac3H11_1806at 27.622 kb on - strand, within Ac3H11_1806at 27.690 kb on + strand, within Ac3H11_1806at 27.690 kb on + strand, within Ac3H11_1806at 27.691 kb on - strand, within Ac3H11_1806at 27.691 kb on - strand, within Ac3H11_1806at 27.744 kb on + strandat 27.744 kb on + strandat 27.744 kb on + strandat 27.745 kb on - strandat 27.745 kb on - strandat 27.745 kb on - strandat 27.792 kb on + strandat 27.792 kb on + strandat 27.792 kb on + strandat 27.792 kb on + strandat 27.793 kb on - strandat 27.793 kb on - strandat 27.843 kb on + strandat 27.843 kb on + strandat 27.843 kb on + strandat 27.843 kb on + strandat 27.843 kb on + strandat 27.844 kb on - strandat 27.844 kb on - strandat 27.870 kb on - strandat 27.870 kb on - strandat 27.918 kb on - strandat 28.011 kb on + strandat 28.011 kb on + strandat 28.131 kb on + strandat 28.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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27,192 + -0.9
27,192 + +0.1
27,192 + +1.3
27,192 + +1.3
27,192 + +1.0
27,192 + +0.6
27,192 + -0.1
27,192 + -0.1
27,193 - -1.5
27,193 - +0.2
27,193 - -1.6
27,205 - +1.3
27,236 + +0.2
27,236 + +0.3
27,294 + +0.0
27,294 + +0.7
27,294 + +0.7
27,295 - -0.8
27,295 - +1.2
27,295 - -0.3
27,295 - -0.3
27,303 + -0.3
27,303 + -0.6
27,303 + +2.3
27,304 - +0.3
27,313 - +0.3
27,371 + Ac3H11_1806 0.20 -0.7
27,371 + Ac3H11_1806 0.20 +0.0
27,435 - Ac3H11_1806 0.32 +0.3
27,465 + +2.9
27,465 + Ac3H11_1806 0.38 -0.1
27,610 + Ac3H11_1806 0.65 -0.6
27,610 + Ac3H11_1806 0.65 +0.5
27,610 + Ac3H11_1806 0.65 -1.5
27,611 - Ac3H11_1806 0.66 +1.3
27,611 - Ac3H11_1806 0.66 +0.7
27,611 - Ac3H11_1806 0.66 -0.7
27,611 - Ac3H11_1806 0.66 -0.3
27,611 - Ac3H11_1806 0.66 -0.5
27,611 - Ac3H11_1806 0.66 +2.3
27,621 + Ac3H11_1806 0.67 -0.7
27,621 + Ac3H11_1806 0.67 +0.6
27,621 + Ac3H11_1806 0.67 +0.5
27,621 + Ac3H11_1806 0.67 +1.3
27,621 + Ac3H11_1806 0.67 +1.1
27,621 + Ac3H11_1806 0.67 -0.1
27,621 + Ac3H11_1806 0.67 +0.3
27,621 + Ac3H11_1806 0.67 -0.7
27,622 - Ac3H11_1806 0.68 -0.5
27,622 - Ac3H11_1806 0.68 +0.3
27,622 - Ac3H11_1806 0.68 +0.2
27,622 - Ac3H11_1806 0.68 +1.0
27,622 - Ac3H11_1806 0.68 -0.7
27,690 + Ac3H11_1806 0.81 +0.3
27,690 + Ac3H11_1806 0.81 +0.3
27,691 - Ac3H11_1806 0.81 -0.3
27,691 - Ac3H11_1806 0.81 -0.5
27,744 + -0.0
27,744 + -1.5
27,744 + -2.0
27,745 - +1.9
27,745 - -0.3
27,745 - +0.3
27,792 + +1.1
27,792 + +0.1
27,792 + -1.3
27,792 + -0.5
27,793 - -1.7
27,793 - +1.7
27,843 + +0.3
27,843 + +0.3
27,843 + +1.3
27,843 + +1.0
27,843 + +0.5
27,844 - +2.7
27,844 - -0.3
27,870 - +0.2
27,870 - +0.8
27,918 - +1.3
28,011 + -0.6
28,011 + -0.6
28,131 + -0.7
28,156 + -1.1

Or see this region's nucleotide sequence