Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16520 and AZOBR_RS16525 are separated by 210 nucleotides AZOBR_RS16525 and AZOBR_RS16530 are separated by 303 nucleotides
AZOBR_RS16520: AZOBR_RS16520 - LysR family transcriptional regulator, at 456,903 to 457,820
_RS16520
AZOBR_RS16525: AZOBR_RS16525 - hypothetical protein, at 458,031 to 458,855
_RS16525
AZOBR_RS16530: AZOBR_RS16530 - membrane protein, at 459,159 to 460,349
_RS16530
Position (kb) 458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 457.051 kb on - strand, within AZOBR_RS16520 at 457.207 kb on - strand, within AZOBR_RS16520 at 457.413 kb on + strand, within AZOBR_RS16520 at 457.645 kb on - strand, within AZOBR_RS16520 at 457.645 kb on - strand, within AZOBR_RS16520 at 457.647 kb on + strand, within AZOBR_RS16520 at 457.647 kb on + strand, within AZOBR_RS16520 at 457.647 kb on + strand, within AZOBR_RS16520 at 457.647 kb on + strand, within AZOBR_RS16520 at 457.647 kb on + strand, within AZOBR_RS16520 at 457.648 kb on - strand, within AZOBR_RS16520 at 457.648 kb on - strand, within AZOBR_RS16520 at 457.648 kb on - strand, within AZOBR_RS16520 at 457.648 kb on - strand, within AZOBR_RS16520 at 457.731 kb on + strand at 457.732 kb on - strand at 458.049 kb on + strand at 458.050 kb on - strand at 458.149 kb on - strand, within AZOBR_RS16525 at 458.149 kb on - strand, within AZOBR_RS16525 at 458.149 kb on - strand, within AZOBR_RS16525 at 458.226 kb on + strand, within AZOBR_RS16525 at 458.226 kb on + strand, within AZOBR_RS16525 at 458.227 kb on - strand, within AZOBR_RS16525 at 458.227 kb on - strand, within AZOBR_RS16525 at 458.325 kb on + strand, within AZOBR_RS16525 at 458.350 kb on - strand, within AZOBR_RS16525 at 458.350 kb on - strand, within AZOBR_RS16525 at 458.350 kb on - strand, within AZOBR_RS16525 at 458.460 kb on - strand, within AZOBR_RS16525 at 458.523 kb on + strand, within AZOBR_RS16525 at 458.523 kb on + strand, within AZOBR_RS16525 at 458.523 kb on + strand, within AZOBR_RS16525 at 458.523 kb on + strand, within AZOBR_RS16525 at 458.523 kb on + strand, within AZOBR_RS16525 at 458.523 kb on + strand, within AZOBR_RS16525 at 458.523 kb on + strand, within AZOBR_RS16525 at 458.523 kb on + strand, within AZOBR_RS16525 at 458.523 kb on + strand, within AZOBR_RS16525 at 458.524 kb on - strand, within AZOBR_RS16525 at 458.529 kb on + strand, within AZOBR_RS16525 at 458.529 kb on + strand, within AZOBR_RS16525 at 458.529 kb on + strand, within AZOBR_RS16525 at 458.529 kb on + strand, within AZOBR_RS16525 at 458.529 kb on + strand, within AZOBR_RS16525 at 458.529 kb on + strand, within AZOBR_RS16525 at 458.529 kb on + strand, within AZOBR_RS16525 at 458.530 kb on - strand, within AZOBR_RS16525 at 458.530 kb on - strand, within AZOBR_RS16525 at 458.622 kb on + strand, within AZOBR_RS16525 at 458.623 kb on - strand, within AZOBR_RS16525 at 458.631 kb on + strand, within AZOBR_RS16525 at 458.632 kb on - strand, within AZOBR_RS16525 at 458.632 kb on - strand, within AZOBR_RS16525 at 458.632 kb on - strand, within AZOBR_RS16525 at 458.632 kb on - strand, within AZOBR_RS16525 at 458.633 kb on + strand, within AZOBR_RS16525 at 458.633 kb on + strand, within AZOBR_RS16525 at 458.633 kb on + strand, within AZOBR_RS16525 at 458.634 kb on - strand, within AZOBR_RS16525 at 458.634 kb on - strand, within AZOBR_RS16525 at 458.945 kb on - strand at 459.078 kb on + strand at 459.078 kb on + strand at 459.079 kb on - strand at 459.229 kb on + strand at 459.229 kb on + strand at 459.230 kb on - strand at 459.230 kb on - strand at 459.298 kb on + strand, within AZOBR_RS16530 at 459.299 kb on - strand, within AZOBR_RS16530 at 459.775 kb on + strand, within AZOBR_RS16530 at 459.776 kb on - strand, within AZOBR_RS16530
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 457,051 - AZOBR_RS16520 0.16 +0.9 457,207 - AZOBR_RS16520 0.33 -0.2 457,413 + AZOBR_RS16520 0.56 -1.8 457,645 - AZOBR_RS16520 0.81 -0.8 457,645 - AZOBR_RS16520 0.81 +0.5 457,647 + AZOBR_RS16520 0.81 -1.0 457,647 + AZOBR_RS16520 0.81 -0.6 457,647 + AZOBR_RS16520 0.81 +1.6 457,647 + AZOBR_RS16520 0.81 -0.6 457,647 + AZOBR_RS16520 0.81 -0.9 457,648 - AZOBR_RS16520 0.81 +0.0 457,648 - AZOBR_RS16520 0.81 +0.1 457,648 - AZOBR_RS16520 0.81 +0.7 457,648 - AZOBR_RS16520 0.81 -0.5 457,731 + -0.3 457,732 - -1.0 458,049 + -0.2 458,050 - -1.4 458,149 - AZOBR_RS16525 0.14 +0.1 458,149 - AZOBR_RS16525 0.14 -0.6 458,149 - AZOBR_RS16525 0.14 -0.6 458,226 + AZOBR_RS16525 0.24 -3.1 458,226 + AZOBR_RS16525 0.24 -0.5 458,227 - AZOBR_RS16525 0.24 -0.3 458,227 - AZOBR_RS16525 0.24 -0.3 458,325 + AZOBR_RS16525 0.36 +0.5 458,350 - AZOBR_RS16525 0.39 -0.2 458,350 - AZOBR_RS16525 0.39 -0.2 458,350 - AZOBR_RS16525 0.39 -0.6 458,460 - AZOBR_RS16525 0.52 -0.2 458,523 + AZOBR_RS16525 0.60 -0.1 458,523 + AZOBR_RS16525 0.60 +0.2 458,523 + AZOBR_RS16525 0.60 -1.4 458,523 + AZOBR_RS16525 0.60 -0.1 458,523 + AZOBR_RS16525 0.60 -1.6 458,523 + AZOBR_RS16525 0.60 -0.5 458,523 + AZOBR_RS16525 0.60 +0.2 458,523 + AZOBR_RS16525 0.60 +0.1 458,523 + AZOBR_RS16525 0.60 -0.7 458,524 - AZOBR_RS16525 0.60 -0.3 458,529 + AZOBR_RS16525 0.60 -0.6 458,529 + AZOBR_RS16525 0.60 -0.2 458,529 + AZOBR_RS16525 0.60 -0.9 458,529 + AZOBR_RS16525 0.60 -0.7 458,529 + AZOBR_RS16525 0.60 -0.2 458,529 + AZOBR_RS16525 0.60 -0.2 458,529 + AZOBR_RS16525 0.60 -1.3 458,530 - AZOBR_RS16525 0.60 -1.2 458,530 - AZOBR_RS16525 0.60 -1.2 458,622 + AZOBR_RS16525 0.72 -0.7 458,623 - AZOBR_RS16525 0.72 +0.1 458,631 + AZOBR_RS16525 0.73 +0.4 458,632 - AZOBR_RS16525 0.73 +0.3 458,632 - AZOBR_RS16525 0.73 -0.3 458,632 - AZOBR_RS16525 0.73 -0.0 458,632 - AZOBR_RS16525 0.73 -0.4 458,633 + AZOBR_RS16525 0.73 -0.2 458,633 + AZOBR_RS16525 0.73 +0.6 458,633 + AZOBR_RS16525 0.73 +0.1 458,634 - AZOBR_RS16525 0.73 -0.8 458,634 - AZOBR_RS16525 0.73 +0.3 458,945 - +0.0 459,078 + -1.6 459,078 + +0.1 459,079 - +0.0 459,229 + +1.1 459,229 + -0.6 459,230 - +0.4 459,230 - -0.4 459,298 + AZOBR_RS16530 0.12 -0.2 459,299 - AZOBR_RS16530 0.12 -0.0 459,775 + AZOBR_RS16530 0.52 -0.4 459,776 - AZOBR_RS16530 0.52 +0.3
Or see this region's nucleotide sequence