Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07445

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07435 and AZOBR_RS07440 overlap by 1 nucleotidesAZOBR_RS07440 and AZOBR_RS07445 overlap by 4 nucleotidesAZOBR_RS07445 and AZOBR_RS07450 are separated by 17 nucleotidesAZOBR_RS07450 and AZOBR_RS07455 overlap by 4 nucleotides AZOBR_RS07435: AZOBR_RS07435 - molybdenum cofactor biosynthesis protein MoaA, at 1,566,580 to 1,567,797 _RS07435 AZOBR_RS07440: AZOBR_RS07440 - molybdenum cofactor biosynthesis protein MoaC, at 1,567,797 to 1,568,291 _RS07440 AZOBR_RS07445: AZOBR_RS07445 - GCN5 family acetyltransferase, at 1,568,288 to 1,568,767 _RS07445 AZOBR_RS07450: AZOBR_RS07450 - indole-3-glycerol-phosphate synthase, at 1,568,785 to 1,569,573 _RS07450 AZOBR_RS07455: AZOBR_RS07455 - anthranilate phosphoribosyltransferase, at 1,569,570 to 1,570,643 _RS07455 Position (kb) 1568 1569Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1568.660 kb on + strand, within AZOBR_RS07445at 1568.660 kb on + strand, within AZOBR_RS07445at 1568.661 kb on - strand, within AZOBR_RS07445at 1568.661 kb on - strand, within AZOBR_RS07445at 1568.661 kb on - strand, within AZOBR_RS07445at 1568.674 kb on - strand, within AZOBR_RS07445at 1569.257 kb on + strand, within AZOBR_RS07450at 1569.257 kb on + strandat 1569.258 kb on - strand, within AZOBR_RS07450at 1569.258 kb on - strand, within AZOBR_RS07450at 1569.258 kb on - strand, within AZOBR_RS07450at 1569.278 kb on + strand, within AZOBR_RS07450at 1569.278 kb on + strand, within AZOBR_RS07450at 1569.278 kb on + strand, within AZOBR_RS07450at 1569.278 kb on + strand, within AZOBR_RS07450at 1569.279 kb on - strand, within AZOBR_RS07450

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,568,660 + AZOBR_RS07445 0.78 -0.1
1,568,660 + AZOBR_RS07445 0.78 -0.3
1,568,661 - AZOBR_RS07445 0.78 -1.7
1,568,661 - AZOBR_RS07445 0.78 -0.9
1,568,661 - AZOBR_RS07445 0.78 -0.1
1,568,674 - AZOBR_RS07445 0.80 +0.1
1,569,257 + AZOBR_RS07450 0.60 -1.7
1,569,257 + -0.1
1,569,258 - AZOBR_RS07450 0.60 -3.1
1,569,258 - AZOBR_RS07450 0.60 -2.5
1,569,258 - AZOBR_RS07450 0.60 -1.5
1,569,278 + AZOBR_RS07450 0.62 -2.6
1,569,278 + AZOBR_RS07450 0.62 -3.3
1,569,278 + AZOBR_RS07450 0.62 -4.2
1,569,278 + AZOBR_RS07450 0.62 -1.5
1,569,279 - AZOBR_RS07450 0.63 -2.9

Or see this region's nucleotide sequence