Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04335 and AZOBR_RS04340 overlap by 4 nucleotides AZOBR_RS04340 and AZOBR_RS04345 are separated by 99 nucleotides AZOBR_RS04345 and AZOBR_RS04350 are separated by 101 nucleotides
AZOBR_RS04335: AZOBR_RS04335 - phosphoribosylformylglycinamidine synthase, at 909,699 to 911,915
_RS04335
AZOBR_RS04340: AZOBR_RS04340 - phosphoribosylformylglycinamidine synthase, at 911,912 to 912,616
_RS04340
AZOBR_RS04345: AZOBR_RS04345 - transcriptional regulator LysR family, at 912,716 to 913,612
_RS04345
AZOBR_RS04350: AZOBR_RS04350 - transporter, at 913,714 to 914,889
_RS04350
Position (kb) 912
913
914 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 911.758 kb on + strand at 911.759 kb on - strand at 911.759 kb on - strand at 911.845 kb on + strand at 911.846 kb on - strand at 912.668 kb on - strand at 912.813 kb on + strand, within AZOBR_RS04345 at 912.814 kb on - strand, within AZOBR_RS04345 at 912.814 kb on - strand, within AZOBR_RS04345 at 912.814 kb on - strand, within AZOBR_RS04345 at 912.816 kb on + strand, within AZOBR_RS04345 at 912.816 kb on + strand, within AZOBR_RS04345 at 912.816 kb on + strand, within AZOBR_RS04345 at 912.816 kb on + strand, within AZOBR_RS04345 at 912.816 kb on + strand, within AZOBR_RS04345 at 912.817 kb on - strand at 912.945 kb on + strand, within AZOBR_RS04345 at 912.945 kb on + strand, within AZOBR_RS04345 at 912.946 kb on - strand, within AZOBR_RS04345 at 913.189 kb on - strand, within AZOBR_RS04345 at 913.407 kb on + strand, within AZOBR_RS04345 at 913.407 kb on + strand, within AZOBR_RS04345 at 913.677 kb on - strand at 913.783 kb on + strand at 913.784 kb on - strand at 913.784 kb on - strand at 913.786 kb on + strand at 913.786 kb on + strand at 913.787 kb on - strand at 913.787 kb on - strand at 914.008 kb on + strand, within AZOBR_RS04350 at 914.008 kb on + strand, within AZOBR_RS04350 at 914.008 kb on + strand, within AZOBR_RS04350 at 914.009 kb on - strand, within AZOBR_RS04350 at 914.009 kb on - strand, within AZOBR_RS04350 at 914.012 kb on - strand, within AZOBR_RS04350 at 914.215 kb on + strand, within AZOBR_RS04350 at 914.272 kb on + strand, within AZOBR_RS04350 at 914.356 kb on + strand, within AZOBR_RS04350 at 914.356 kb on + strand, within AZOBR_RS04350 at 914.356 kb on + strand, within AZOBR_RS04350 at 914.356 kb on + strand, within AZOBR_RS04350 at 914.356 kb on + strand, within AZOBR_RS04350 at 914.356 kb on + strand, within AZOBR_RS04350 at 914.357 kb on - strand, within AZOBR_RS04350 at 914.357 kb on - strand, within AZOBR_RS04350 at 914.357 kb on - strand, within AZOBR_RS04350 at 914.357 kb on - strand, within AZOBR_RS04350
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 911,758 + +1.1 911,759 - -0.6 911,759 - -2.1 911,845 + -2.2 911,846 - +1.1 912,668 - -4.2 912,813 + AZOBR_RS04345 0.11 +0.7 912,814 - AZOBR_RS04345 0.11 -0.2 912,814 - AZOBR_RS04345 0.11 -1.5 912,814 - AZOBR_RS04345 0.11 -0.4 912,816 + AZOBR_RS04345 0.11 -0.6 912,816 + AZOBR_RS04345 0.11 +0.1 912,816 + AZOBR_RS04345 0.11 +1.6 912,816 + AZOBR_RS04345 0.11 +0.4 912,816 + AZOBR_RS04345 0.11 +0.1 912,817 - -0.9 912,945 + AZOBR_RS04345 0.26 +0.3 912,945 + AZOBR_RS04345 0.26 +0.6 912,946 - AZOBR_RS04345 0.26 -0.3 913,189 - AZOBR_RS04345 0.53 +0.1 913,407 + AZOBR_RS04345 0.77 +0.4 913,407 + AZOBR_RS04345 0.77 +0.5 913,677 - -0.0 913,783 + +0.2 913,784 - -0.9 913,784 - +1.5 913,786 + -0.1 913,786 + +0.2 913,787 - +0.7 913,787 - +0.2 914,008 + AZOBR_RS04350 0.25 -0.5 914,008 + AZOBR_RS04350 0.25 +1.8 914,008 + AZOBR_RS04350 0.25 +0.5 914,009 - AZOBR_RS04350 0.25 -2.3 914,009 - AZOBR_RS04350 0.25 +0.1 914,012 - AZOBR_RS04350 0.25 -0.2 914,215 + AZOBR_RS04350 0.43 +0.2 914,272 + AZOBR_RS04350 0.47 +0.6 914,356 + AZOBR_RS04350 0.55 -0.4 914,356 + AZOBR_RS04350 0.55 +0.3 914,356 + AZOBR_RS04350 0.55 +0.9 914,356 + AZOBR_RS04350 0.55 -0.4 914,356 + AZOBR_RS04350 0.55 -0.4 914,356 + AZOBR_RS04350 0.55 +0.3 914,357 - AZOBR_RS04350 0.55 +1.1 914,357 - AZOBR_RS04350 0.55 +0.0 914,357 - AZOBR_RS04350 0.55 +0.8 914,357 - AZOBR_RS04350 0.55 +0.2
Or see this region's nucleotide sequence