Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22060

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22050 and AO353_22055 are separated by 10 nucleotidesAO353_22055 and AO353_22060 overlap by 7 nucleotidesAO353_22060 and AO353_22065 are separated by 737 nucleotides AO353_22050: AO353_22050 - protease, at 4,828,746 to 4,829,741 _22050 AO353_22055: AO353_22055 - protease, at 4,829,752 to 4,830,642 _22055 AO353_22060: AO353_22060 - lipid carrier protein, at 4,830,636 to 4,831,103 _22060 AO353_22065: AO353_22065 - zinc-binding protein, at 4,831,841 to 4,832,245 _22065 Position (kb) 4830 4831 4832Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4829.678 kb on - strandat 4829.678 kb on - strandat 4829.721 kb on + strandat 4829.722 kb on - strandat 4829.722 kb on - strandat 4829.782 kb on + strandat 4829.812 kb on + strandat 4829.812 kb on + strandat 4829.813 kb on - strandat 4829.848 kb on + strand, within AO353_22055at 4829.848 kb on + strand, within AO353_22055at 4829.848 kb on + strand, within AO353_22055at 4829.849 kb on - strand, within AO353_22055at 4829.849 kb on - strand, within AO353_22055at 4829.921 kb on + strand, within AO353_22055at 4829.921 kb on + strand, within AO353_22055at 4830.109 kb on + strand, within AO353_22055at 4830.109 kb on + strandat 4830.109 kb on + strand, within AO353_22055at 4830.171 kb on - strand, within AO353_22055at 4830.171 kb on - strand, within AO353_22055at 4830.277 kb on + strand, within AO353_22055at 4830.278 kb on - strand, within AO353_22055at 4830.295 kb on - strand, within AO353_22055at 4830.343 kb on - strand, within AO353_22055at 4830.350 kb on - strand, within AO353_22055at 4830.440 kb on + strand, within AO353_22055at 4830.440 kb on + strand, within AO353_22055at 4830.452 kb on - strand, within AO353_22055at 4830.510 kb on + strand, within AO353_22055at 4830.533 kb on - strand, within AO353_22055at 4831.116 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.135 kb on - strandat 4831.135 kb on - strandat 4831.161 kb on - strandat 4831.184 kb on + strandat 4831.229 kb on - strandat 4831.229 kb on - strandat 4831.242 kb on + strandat 4831.420 kb on + strandat 4831.421 kb on - strandat 4831.421 kb on - strandat 4831.421 kb on - strandat 4831.478 kb on - strandat 4831.478 kb on - strandat 4831.478 kb on - strandat 4831.705 kb on - strandat 4831.750 kb on - strandat 4831.775 kb on + strandat 4831.775 kb on + strandat 4831.775 kb on + strandat 4831.775 kb on + strandat 4831.775 kb on + strandat 4831.776 kb on - strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.832 kb on - strandat 4831.832 kb on - strandat 4831.886 kb on - strand, within AO353_22065at 4831.975 kb on - strand, within AO353_22065

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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4,829,678 - -1.3
4,829,678 - +0.3
4,829,721 + -1.3
4,829,722 - +0.3
4,829,722 - +0.8
4,829,782 + +3.3
4,829,812 + +1.4
4,829,812 + +0.5
4,829,813 - -1.9
4,829,848 + AO353_22055 0.11 +1.7
4,829,848 + AO353_22055 0.11 +0.7
4,829,848 + AO353_22055 0.11 +0.4
4,829,849 - AO353_22055 0.11 +1.3
4,829,849 - AO353_22055 0.11 -1.3
4,829,921 + AO353_22055 0.19 +0.3
4,829,921 + AO353_22055 0.19 -0.5
4,830,109 + AO353_22055 0.40 +1.3
4,830,109 + -1.3
4,830,109 + AO353_22055 0.40 +0.4
4,830,171 - AO353_22055 0.47 -0.9
4,830,171 - AO353_22055 0.47 +2.3
4,830,277 + AO353_22055 0.59 -0.9
4,830,278 - AO353_22055 0.59 -1.6
4,830,295 - AO353_22055 0.61 +0.7
4,830,343 - AO353_22055 0.66 -1.6
4,830,350 - AO353_22055 0.67 -0.3
4,830,440 + AO353_22055 0.77 +0.9
4,830,440 + AO353_22055 0.77 +0.4
4,830,452 - AO353_22055 0.79 +0.4
4,830,510 + AO353_22055 0.85 +1.3
4,830,533 - AO353_22055 0.88 +0.7
4,831,116 - -0.3
4,831,131 - +1.7
4,831,131 - +1.4
4,831,131 - -0.9
4,831,131 - -0.3
4,831,131 - +0.3
4,831,131 - +0.7
4,831,131 - +1.4
4,831,131 - +0.6
4,831,135 - -1.3
4,831,135 - -0.1
4,831,161 - +2.8
4,831,184 + +2.5
4,831,229 - -1.3
4,831,229 - +0.3
4,831,242 + +1.0
4,831,420 + -0.1
4,831,421 - +0.7
4,831,421 - +1.3
4,831,421 - +0.4
4,831,478 - +1.7
4,831,478 - +0.7
4,831,478 - -1.9
4,831,705 - -0.3
4,831,750 - -1.3
4,831,775 + +0.7
4,831,775 + +0.2
4,831,775 + -0.8
4,831,775 + +0.3
4,831,775 + -0.7
4,831,776 - +0.3
4,831,779 + -0.9
4,831,779 + -0.2
4,831,779 + -0.3
4,831,779 + +1.3
4,831,779 + +0.4
4,831,779 + +0.4
4,831,779 + +1.7
4,831,780 - +1.1
4,831,780 - -0.3
4,831,780 - +0.7
4,831,780 - +1.7
4,831,780 - -0.3
4,831,780 - -0.1
4,831,780 - +0.9
4,831,780 - +1.7
4,831,832 - +0.7
4,831,832 - -0.7
4,831,886 - AO353_22065 0.11 +1.7
4,831,975 - AO353_22065 0.33 +1.7

Or see this region's nucleotide sequence