Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18775 and ABZR86_RS18780 overlap by 4 nucleotides ABZR86_RS18780 and ABZR86_RS18785 are separated by 66 nucleotides ABZR86_RS18785 and ABZR86_RS18790 are separated by 251 nucleotides
ABZR86_RS18775: ABZR86_RS18775 - nucleotidyltransferase family protein, at 183,452 to 184,150
_RS18775
ABZR86_RS18780: ABZR86_RS18780 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 184,147 to 184,776
_RS18780
ABZR86_RS18785: ABZR86_RS18785 - class I SAM-dependent methyltransferase, at 184,843 to 185,676
_RS18785
ABZR86_RS18790: ABZR86_RS18790 - hypothetical protein, at 185,928 to 187,997
_RS18790
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 183.894 kb on + strand, within ABZR86_RS18775 at 183.894 kb on + strand, within ABZR86_RS18775 at 183.894 kb on + strand, within ABZR86_RS18775 at 184.118 kb on + strand at 184.474 kb on + strand, within ABZR86_RS18780 at 184.474 kb on + strand, within ABZR86_RS18780 at 184.475 kb on - strand, within ABZR86_RS18780 at 184.477 kb on + strand, within ABZR86_RS18780 at 184.663 kb on + strand, within ABZR86_RS18780 at 184.850 kb on + strand at 184.850 kb on + strand at 184.850 kb on + strand at 184.850 kb on + strand at 184.851 kb on - strand at 184.851 kb on - strand at 184.851 kb on - strand at 184.965 kb on - strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.129 kb on - strand, within ABZR86_RS18785 at 185.129 kb on - strand, within ABZR86_RS18785 at 185.129 kb on - strand, within ABZR86_RS18785 at 185.129 kb on - strand, within ABZR86_RS18785 at 185.155 kb on + strand, within ABZR86_RS18785 at 185.156 kb on - strand, within ABZR86_RS18785 at 185.192 kb on - strand, within ABZR86_RS18785 at 185.354 kb on + strand, within ABZR86_RS18785 at 185.355 kb on - strand, within ABZR86_RS18785 at 185.469 kb on + strand, within ABZR86_RS18785 at 185.470 kb on - strand, within ABZR86_RS18785 at 185.510 kb on - strand, within ABZR86_RS18785 at 185.548 kb on + strand, within ABZR86_RS18785 at 185.548 kb on + strand, within ABZR86_RS18785 at 185.549 kb on - strand, within ABZR86_RS18785 at 185.549 kb on - strand, within ABZR86_RS18785 at 185.549 kb on - strand, within ABZR86_RS18785 at 185.549 kb on - strand, within ABZR86_RS18785 at 185.645 kb on - strand at 185.645 kb on - strand at 185.674 kb on + strand at 185.675 kb on - strand at 185.729 kb on + strand at 185.729 kb on + strand at 185.730 kb on - strand at 185.730 kb on - strand at 185.812 kb on + strand at 185.812 kb on + strand at 185.812 kb on + strand at 185.812 kb on + strand at 185.812 kb on + strand at 185.813 kb on - strand at 185.813 kb on - strand at 185.813 kb on - strand at 185.814 kb on + strand at 185.814 kb on + strand at 185.815 kb on - strand at 185.815 kb on - strand at 185.829 kb on + strand at 185.830 kb on - strand at 185.984 kb on + strand at 186.208 kb on + strand, within ABZR86_RS18790 at 186.209 kb on - strand, within ABZR86_RS18790 at 186.289 kb on + strand, within ABZR86_RS18790 at 186.309 kb on + strand, within ABZR86_RS18790 at 186.309 kb on + strand, within ABZR86_RS18790 at 186.310 kb on - strand, within ABZR86_RS18790 at 186.310 kb on - strand, within ABZR86_RS18790 at 186.310 kb on - strand, within ABZR86_RS18790 at 186.321 kb on + strand, within ABZR86_RS18790 at 186.322 kb on - strand, within ABZR86_RS18790 at 186.322 kb on - strand, within ABZR86_RS18790 at 186.379 kb on + strand, within ABZR86_RS18790 at 186.496 kb on - strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.553 kb on - strand, within ABZR86_RS18790 at 186.553 kb on - strand, within ABZR86_RS18790 at 186.553 kb on - strand, within ABZR86_RS18790 at 186.553 kb on - strand, within ABZR86_RS18790 at 186.618 kb on + strand, within ABZR86_RS18790 at 186.618 kb on + strand, within ABZR86_RS18790 at 186.618 kb on + strand, within ABZR86_RS18790 at 186.618 kb on + strand, within ABZR86_RS18790 at 186.619 kb on - strand, within ABZR86_RS18790 at 186.619 kb on - strand, within ABZR86_RS18790 at 186.619 kb on - strand, within ABZR86_RS18790
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 183,894 + ABZR86_RS18775 0.63 -0.4 183,894 + ABZR86_RS18775 0.63 -3.1 183,894 + ABZR86_RS18775 0.63 -1.8 184,118 + -1.8 184,474 + ABZR86_RS18780 0.52 -2.2 184,474 + ABZR86_RS18780 0.52 -0.4 184,475 - ABZR86_RS18780 0.52 -1.8 184,477 + ABZR86_RS18780 0.52 -1.2 184,663 + ABZR86_RS18780 0.82 -0.4 184,850 + -0.1 184,850 + +0.0 184,850 + -0.6 184,850 + -0.4 184,851 - -0.6 184,851 - +0.8 184,851 - +0.3 184,965 - ABZR86_RS18785 0.15 +0.2 185,128 + ABZR86_RS18785 0.34 +0.2 185,128 + ABZR86_RS18785 0.34 +0.4 185,128 + ABZR86_RS18785 0.34 -0.4 185,128 + ABZR86_RS18785 0.34 -0.0 185,128 + ABZR86_RS18785 0.34 -0.5 185,128 + ABZR86_RS18785 0.34 -1.2 185,128 + ABZR86_RS18785 0.34 -0.6 185,128 + ABZR86_RS18785 0.34 +0.0 185,129 - ABZR86_RS18785 0.34 -0.5 185,129 - ABZR86_RS18785 0.34 -0.2 185,129 - ABZR86_RS18785 0.34 -1.2 185,129 - ABZR86_RS18785 0.34 +0.1 185,155 + ABZR86_RS18785 0.37 -1.3 185,156 - ABZR86_RS18785 0.38 -0.8 185,192 - ABZR86_RS18785 0.42 -0.3 185,354 + ABZR86_RS18785 0.61 -0.4 185,355 - ABZR86_RS18785 0.61 +0.5 185,469 + ABZR86_RS18785 0.75 -0.3 185,470 - ABZR86_RS18785 0.75 +0.4 185,510 - ABZR86_RS18785 0.80 -0.2 185,548 + ABZR86_RS18785 0.85 -0.7 185,548 + ABZR86_RS18785 0.85 +0.8 185,549 - ABZR86_RS18785 0.85 -0.6 185,549 - ABZR86_RS18785 0.85 +0.1 185,549 - ABZR86_RS18785 0.85 -0.1 185,549 - ABZR86_RS18785 0.85 -1.3 185,645 - +0.2 185,645 - +0.1 185,674 + +0.7 185,675 - -0.6 185,729 + +0.9 185,729 + -0.2 185,730 - +0.0 185,730 - -0.7 185,812 + +1.3 185,812 + -0.0 185,812 + +0.0 185,812 + +0.3 185,812 + +0.0 185,813 - +0.7 185,813 - +1.2 185,813 - -0.6 185,814 + -0.4 185,814 + -1.2 185,815 - +0.3 185,815 - +0.7 185,829 + +0.2 185,830 - +0.3 185,984 + -0.0 186,208 + ABZR86_RS18790 0.14 +0.0 186,209 - ABZR86_RS18790 0.14 -0.5 186,289 + ABZR86_RS18790 0.17 +1.1 186,309 + ABZR86_RS18790 0.18 -0.4 186,309 + ABZR86_RS18790 0.18 +1.2 186,310 - ABZR86_RS18790 0.18 +0.4 186,310 - ABZR86_RS18790 0.18 +0.5 186,310 - ABZR86_RS18790 0.18 +0.1 186,321 + ABZR86_RS18790 0.19 +2.0 186,322 - ABZR86_RS18790 0.19 +0.2 186,322 - ABZR86_RS18790 0.19 +0.3 186,379 + ABZR86_RS18790 0.22 -0.4 186,496 - ABZR86_RS18790 0.27 -0.1 186,552 + ABZR86_RS18790 0.30 +0.5 186,552 + ABZR86_RS18790 0.30 -0.2 186,552 + ABZR86_RS18790 0.30 -0.2 186,552 + ABZR86_RS18790 0.30 +0.6 186,552 + ABZR86_RS18790 0.30 -0.7 186,552 + ABZR86_RS18790 0.30 +0.8 186,552 + ABZR86_RS18790 0.30 -0.4 186,553 - ABZR86_RS18790 0.30 -0.4 186,553 - ABZR86_RS18790 0.30 +0.3 186,553 - ABZR86_RS18790 0.30 +0.3 186,553 - ABZR86_RS18790 0.30 +0.6 186,618 + ABZR86_RS18790 0.33 +0.2 186,618 + ABZR86_RS18790 0.33 +0.2 186,618 + ABZR86_RS18790 0.33 +0.5 186,618 + ABZR86_RS18790 0.33 +0.5 186,619 - ABZR86_RS18790 0.33 -0.6 186,619 - ABZR86_RS18790 0.33 +1.2 186,619 - ABZR86_RS18790 0.33 -0.2
Or see this region's nucleotide sequence