Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS13595

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS13590 and ABZR86_RS13595 are separated by 45 nucleotidesABZR86_RS13595 and ABZR86_RS13600 are separated by 104 nucleotidesABZR86_RS13600 and ABZR86_RS13605 are separated by 120 nucleotides ABZR86_RS13590: ABZR86_RS13590 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 3,040,994 to 3,042,361 _RS13590 ABZR86_RS13595: ABZR86_RS13595 - hypothetical protein, at 3,042,407 to 3,042,958 _RS13595 ABZR86_RS13600: ABZR86_RS13600 - F0F1 ATP synthase subunit epsilon, at 3,043,063 to 3,043,488 _RS13600 ABZR86_RS13605: ABZR86_RS13605 - F0F1 ATP synthase subunit beta, at 3,043,609 to 3,045,042 _RS13605 Position (kb) 3042 3043Strain fitness (log2 ratio) -1 0 1 2at 3042.398 kb on - strandat 3042.471 kb on + strand, within ABZR86_RS13595at 3042.472 kb on - strand, within ABZR86_RS13595at 3042.472 kb on - strand, within ABZR86_RS13595at 3042.620 kb on - strand, within ABZR86_RS13595at 3042.620 kb on - strand, within ABZR86_RS13595at 3042.620 kb on - strand, within ABZR86_RS13595at 3042.620 kb on - strand, within ABZR86_RS13595at 3042.620 kb on - strand, within ABZR86_RS13595at 3042.621 kb on + strand, within ABZR86_RS13595at 3042.621 kb on + strand, within ABZR86_RS13595at 3042.621 kb on + strand, within ABZR86_RS13595at 3042.621 kb on + strand, within ABZR86_RS13595at 3042.622 kb on - strand, within ABZR86_RS13595at 3042.622 kb on - strand, within ABZR86_RS13595at 3042.622 kb on - strand, within ABZR86_RS13595at 3042.622 kb on - strand, within ABZR86_RS13595at 3042.622 kb on - strand, within ABZR86_RS13595at 3042.622 kb on - strand, within ABZR86_RS13595at 3042.665 kb on + strand, within ABZR86_RS13595at 3042.665 kb on + strand, within ABZR86_RS13595at 3042.666 kb on - strand, within ABZR86_RS13595at 3042.666 kb on - strand, within ABZR86_RS13595at 3042.753 kb on + strand, within ABZR86_RS13595at 3042.816 kb on + strand, within ABZR86_RS13595at 3043.031 kb on + strandat 3043.031 kb on + strandat 3043.031 kb on + strandat 3043.031 kb on + strandat 3043.031 kb on + strandat 3043.031 kb on + strandat 3043.031 kb on + strandat 3043.032 kb on - strandat 3043.032 kb on - strandat 3043.032 kb on - strandat 3043.032 kb on - strandat 3043.032 kb on - strandat 3043.521 kb on - strandat 3043.535 kb on - strandat 3043.573 kb on - strandat 3043.573 kb on - strandat 3043.573 kb on - strandat 3043.573 kb on - strandat 3043.576 kb on - strandat 3043.576 kb on - strandat 3043.576 kb on - strandat 3043.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,042,398 - +0.4
3,042,471 + ABZR86_RS13595 0.12 +0.5
3,042,472 - ABZR86_RS13595 0.12 -0.6
3,042,472 - ABZR86_RS13595 0.12 -0.5
3,042,620 - ABZR86_RS13595 0.39 -0.3
3,042,620 - ABZR86_RS13595 0.39 -0.3
3,042,620 - ABZR86_RS13595 0.39 +0.3
3,042,620 - ABZR86_RS13595 0.39 +0.2
3,042,620 - ABZR86_RS13595 0.39 -0.4
3,042,621 + ABZR86_RS13595 0.39 -0.1
3,042,621 + ABZR86_RS13595 0.39 +0.1
3,042,621 + ABZR86_RS13595 0.39 -0.3
3,042,621 + ABZR86_RS13595 0.39 +0.7
3,042,622 - ABZR86_RS13595 0.39 -1.3
3,042,622 - ABZR86_RS13595 0.39 -1.0
3,042,622 - ABZR86_RS13595 0.39 +0.0
3,042,622 - ABZR86_RS13595 0.39 -0.6
3,042,622 - ABZR86_RS13595 0.39 +0.2
3,042,622 - ABZR86_RS13595 0.39 -0.7
3,042,665 + ABZR86_RS13595 0.47 -1.3
3,042,665 + ABZR86_RS13595 0.47 +0.5
3,042,666 - ABZR86_RS13595 0.47 +0.6
3,042,666 - ABZR86_RS13595 0.47 -0.8
3,042,753 + ABZR86_RS13595 0.63 +0.3
3,042,816 + ABZR86_RS13595 0.74 +0.0
3,043,031 + +0.3
3,043,031 + -0.9
3,043,031 + -0.8
3,043,031 + -0.0
3,043,031 + +0.7
3,043,031 + -1.3
3,043,031 + +0.9
3,043,032 - +0.2
3,043,032 - -0.2
3,043,032 - +2.1
3,043,032 - -0.7
3,043,032 - -0.6
3,043,521 - +0.2
3,043,535 - +1.8
3,043,573 - +1.2
3,043,573 - +0.0
3,043,573 - -0.1
3,043,573 - -0.3
3,043,576 - +0.0
3,043,576 - +0.8
3,043,576 - +0.5
3,043,583 - +0.6

Or see this region's nucleotide sequence