Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS07505 and ABZR86_RS07510 are separated by 282 nucleotides ABZR86_RS07510 and ABZR86_RS07515 are separated by 9 nucleotides ABZR86_RS07515 and ABZR86_RS07520 are separated by 222 nucleotides
ABZR86_RS07505: ABZR86_RS07505 - NAD(P)H-dependent oxidoreductase, at 1,654,064 to 1,654,612
_RS07505
ABZR86_RS07510: ABZR86_RS07510 - diguanylate cyclase, at 1,654,895 to 1,656,574
_RS07510
ABZR86_RS07515: ABZR86_RS07515 - Ivy family c-type lysozyme inhibitor, at 1,656,584 to 1,657,138
_RS07515
ABZR86_RS07520: ABZR86_RS07520 - thiamine pyrophosphate-dependent enzyme, at 1,657,361 to 1,659,628
_RS07520
Position (kb)
1654
1655
1656
1657 Strain fitness (log2 ratio)
-1
0
1
2 at 1653.944 kb on + strand at 1653.944 kb on + strand at 1653.945 kb on - strand at 1654.010 kb on - strand at 1654.010 kb on - strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.092 kb on + strand at 1654.093 kb on - strand at 1654.093 kb on - strand at 1654.093 kb on - strand at 1654.093 kb on - strand at 1654.093 kb on - strand at 1654.097 kb on - strand at 1654.097 kb on - strand at 1654.126 kb on + strand, within ABZR86_RS07505 at 1654.218 kb on + strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.219 kb on - strand, within ABZR86_RS07505 at 1654.476 kb on + strand, within ABZR86_RS07505 at 1654.477 kb on - strand, within ABZR86_RS07505 at 1654.593 kb on - strand at 1654.721 kb on + strand at 1654.721 kb on + strand at 1654.721 kb on + strand at 1654.722 kb on - strand at 1655.163 kb on - strand, within ABZR86_RS07510 at 1655.163 kb on - strand, within ABZR86_RS07510 at 1655.348 kb on + strand, within ABZR86_RS07510 at 1655.349 kb on - strand, within ABZR86_RS07510 at 1655.349 kb on - strand, within ABZR86_RS07510 at 1655.477 kb on + strand, within ABZR86_RS07510 at 1655.489 kb on + strand, within ABZR86_RS07510 at 1655.519 kb on + strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.520 kb on - strand, within ABZR86_RS07510 at 1655.785 kb on - strand, within ABZR86_RS07510 at 1656.470 kb on + strand at 1656.470 kb on + strand at 1656.470 kb on + strand at 1656.501 kb on + strand at 1656.597 kb on + strand at 1656.597 kb on + strand at 1656.597 kb on + strand at 1656.597 kb on + strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.847 kb on + strand, within ABZR86_RS07515 at 1656.847 kb on + strand, within ABZR86_RS07515 at 1656.848 kb on - strand, within ABZR86_RS07515 at 1656.943 kb on - strand, within ABZR86_RS07515 at 1656.943 kb on - strand, within ABZR86_RS07515 at 1657.183 kb on - strand at 1657.257 kb on + strand at 1657.258 kb on - strand at 1657.343 kb on + strand at 1657.343 kb on + strand at 1657.343 kb on + strand at 1657.344 kb on - strand at 1657.344 kb on - strand at 1657.344 kb on - strand at 1657.363 kb on - strand at 1657.363 kb on - strand at 1657.440 kb on + strand at 1657.440 kb on + strand at 1657.440 kb on + strand at 1657.440 kb on + strand at 1657.445 kb on - strand at 1657.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 1,653,944 + -0.5 1,653,944 + -0.1 1,653,945 - -0.9 1,654,010 - -0.4 1,654,010 - +0.9 1,654,092 + -0.1 1,654,092 + +0.1 1,654,092 + -1.0 1,654,092 + +0.6 1,654,092 + -0.2 1,654,092 + -0.4 1,654,092 + -0.2 1,654,092 + +0.5 1,654,092 + -0.3 1,654,093 - -0.9 1,654,093 - +0.7 1,654,093 - +0.8 1,654,093 - +0.5 1,654,093 - -0.8 1,654,097 - +0.0 1,654,097 - +0.2 1,654,126 + ABZR86_RS07505 0.11 +0.1 1,654,218 + ABZR86_RS07505 0.28 +0.5 1,654,219 - ABZR86_RS07505 0.28 +0.7 1,654,219 - ABZR86_RS07505 0.28 -0.1 1,654,219 - ABZR86_RS07505 0.28 +0.0 1,654,219 - ABZR86_RS07505 0.28 -0.6 1,654,219 - ABZR86_RS07505 0.28 +0.1 1,654,476 + ABZR86_RS07505 0.75 -0.1 1,654,477 - ABZR86_RS07505 0.75 +0.1 1,654,593 - -0.1 1,654,721 + -0.0 1,654,721 + -0.4 1,654,721 + +0.5 1,654,722 - -0.0 1,655,163 - ABZR86_RS07510 0.16 -0.8 1,655,163 - ABZR86_RS07510 0.16 +1.2 1,655,348 + ABZR86_RS07510 0.27 -0.1 1,655,349 - ABZR86_RS07510 0.27 +0.2 1,655,349 - ABZR86_RS07510 0.27 +0.1 1,655,477 + ABZR86_RS07510 0.35 +0.2 1,655,489 + ABZR86_RS07510 0.35 +0.1 1,655,519 + ABZR86_RS07510 0.37 +0.8 1,655,520 - ABZR86_RS07510 0.37 +0.1 1,655,520 - ABZR86_RS07510 0.37 -0.4 1,655,520 - ABZR86_RS07510 0.37 +0.4 1,655,520 - ABZR86_RS07510 0.37 -0.6 1,655,520 - ABZR86_RS07510 0.37 -0.0 1,655,785 - ABZR86_RS07510 0.53 +0.1 1,656,470 + +1.1 1,656,470 + -0.1 1,656,470 + -0.2 1,656,501 + -0.3 1,656,597 + +0.1 1,656,597 + -0.3 1,656,597 + +1.8 1,656,597 + +1.1 1,656,598 - +0.4 1,656,598 - +0.4 1,656,598 - -0.3 1,656,598 - -0.0 1,656,598 - -0.5 1,656,598 - -0.9 1,656,598 - +0.8 1,656,847 + ABZR86_RS07515 0.47 +0.0 1,656,847 + ABZR86_RS07515 0.47 -1.0 1,656,848 - ABZR86_RS07515 0.48 -0.3 1,656,943 - ABZR86_RS07515 0.65 -0.3 1,656,943 - ABZR86_RS07515 0.65 -1.0 1,657,183 - -0.0 1,657,257 + +1.1 1,657,258 - +0.1 1,657,343 + -0.0 1,657,343 + -0.3 1,657,343 + -0.4 1,657,344 - -0.3 1,657,344 - -0.3 1,657,344 - -0.5 1,657,363 - +0.8 1,657,363 - +1.4 1,657,440 + -0.3 1,657,440 + +1.1 1,657,440 + -0.1 1,657,440 + -0.2 1,657,445 - -0.6 1,657,445 - +0.5
Or see this region's nucleotide sequence