Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2651 and DvMF_2652 are separated by 157 nucleotides DvMF_2652 and DvMF_2653 are separated by 61 nucleotides DvMF_2653 and DvMF_2654 are separated by 171 nucleotides DvMF_2654 and DvMF_2655 are separated by 213 nucleotides
DvMF_2651: DvMF_2651 - dihydrouridine synthase DuS (RefSeq), at 3,352,099 to 3,353,250
_2651
DvMF_2652: DvMF_2652 - transcriptional regulator, MerR family (RefSeq), at 3,353,408 to 3,353,779
_2652
DvMF_2653: DvMF_2653 - Carboxymuconolactone decarboxylase (RefSeq), at 3,353,841 to 3,354,257
_2653
DvMF_2654: DvMF_2654 - acetyltransferase (RefSeq), at 3,354,429 to 3,354,938
_2654
DvMF_2655: DvMF_2655 - hypothetical protein (RefSeq), at 3,355,152 to 3,355,688
_2655
Position (kb)
3353
3354
3355 Strain fitness (log2 ratio)
-1
0
1 at 3352.857 kb on - strand, within DvMF_2651 at 3353.385 kb on - strand at 3353.433 kb on + strand at 3353.433 kb on + strand at 3353.448 kb on + strand, within DvMF_2652 at 3353.792 kb on + strand at 3353.833 kb on + strand at 3354.183 kb on - strand, within DvMF_2653 at 3354.384 kb on - strand at 3355.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml remove 3,352,857 - DvMF_2651 0.66 -0.8 3,353,385 - -0.6 3,353,433 + -0.5 3,353,433 + -0.6 3,353,448 + DvMF_2652 0.11 -0.4 3,353,792 + -0.1 3,353,833 + -0.6 3,354,183 - DvMF_2653 0.82 -0.9 3,354,384 - +0.1 3,355,080 + -0.6
Or see this region's nucleotide sequence