Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2164 and DvMF_2165 are separated by 368 nucleotides DvMF_2165 and DvMF_2166 are separated by 309 nucleotides
DvMF_2164: DvMF_2164 - efflux transporter, RND family, MFP subunit (RefSeq), at 2,699,976 to 2,701,193
_2164
DvMF_2165: DvMF_2165 - transcriptional regulator, TetR family (RefSeq), at 2,701,562 to 2,702,353
_2165
DvMF_2166: DvMF_2166 - protein of unknown function DUF169 (RefSeq), at 2,702,663 to 2,703,508
_2166
Position (kb)
2701
2702
2703 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2700.596 kb on - strand, within DvMF_2164 at 2700.800 kb on - strand, within DvMF_2164 at 2700.893 kb on + strand, within DvMF_2164 at 2700.901 kb on - strand, within DvMF_2164 at 2700.901 kb on - strand, within DvMF_2164 at 2700.997 kb on - strand, within DvMF_2164 at 2701.004 kb on + strand, within DvMF_2164 at 2701.041 kb on - strand, within DvMF_2164 at 2701.090 kb on + strand at 2701.150 kb on + strand at 2701.185 kb on - strand at 2701.201 kb on + strand at 2701.268 kb on - strand at 2701.308 kb on + strand at 2701.365 kb on - strand at 2701.490 kb on - strand at 2701.559 kb on + strand at 2701.635 kb on - strand at 2701.644 kb on - strand, within DvMF_2165 at 2701.954 kb on + strand, within DvMF_2165 at 2701.981 kb on + strand, within DvMF_2165 at 2702.257 kb on - strand, within DvMF_2165 at 2702.259 kb on + strand, within DvMF_2165 at 2702.277 kb on + strand at 2702.577 kb on - strand at 2702.752 kb on + strand, within DvMF_2166 at 2702.880 kb on + strand, within DvMF_2166 at 2702.897 kb on + strand, within DvMF_2166 at 2703.207 kb on + strand, within DvMF_2166
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml remove 2,700,596 - DvMF_2164 0.51 -3.3 2,700,800 - DvMF_2164 0.68 -3.0 2,700,893 + DvMF_2164 0.75 -4.0 2,700,901 - DvMF_2164 0.76 -3.9 2,700,901 - DvMF_2164 0.76 -3.7 2,700,997 - DvMF_2164 0.84 -3.0 2,701,004 + DvMF_2164 0.84 -3.9 2,701,041 - DvMF_2164 0.87 -2.9 2,701,090 + -4.0 2,701,150 + -3.3 2,701,185 - -3.8 2,701,201 + -2.9 2,701,268 - -3.6 2,701,308 + -1.5 2,701,365 - -1.2 2,701,490 - +0.3 2,701,559 + +0.5 2,701,635 - +2.7 2,701,644 - DvMF_2165 0.10 +2.9 2,701,954 + DvMF_2165 0.49 +2.4 2,701,981 + DvMF_2165 0.53 +2.6 2,702,257 - DvMF_2165 0.88 +1.6 2,702,259 + DvMF_2165 0.88 +2.4 2,702,277 + +2.0 2,702,577 - -0.1 2,702,752 + DvMF_2166 0.11 +0.4 2,702,880 + DvMF_2166 0.26 -0.3 2,702,897 + DvMF_2166 0.28 -0.1 2,703,207 + DvMF_2166 0.64 +0.1
Or see this region's nucleotide sequence