Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2165

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2164 and DvMF_2165 are separated by 368 nucleotidesDvMF_2165 and DvMF_2166 are separated by 309 nucleotides DvMF_2164: DvMF_2164 - efflux transporter, RND family, MFP subunit (RefSeq), at 2,699,976 to 2,701,193 _2164 DvMF_2165: DvMF_2165 - transcriptional regulator, TetR family (RefSeq), at 2,701,562 to 2,702,353 _2165 DvMF_2166: DvMF_2166 - protein of unknown function DUF169 (RefSeq), at 2,702,663 to 2,703,508 _2166 Position (kb) 2701 2702 2703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2700.596 kb on - strand, within DvMF_2164at 2700.800 kb on - strand, within DvMF_2164at 2700.893 kb on + strand, within DvMF_2164at 2700.901 kb on - strand, within DvMF_2164at 2700.901 kb on - strand, within DvMF_2164at 2700.997 kb on - strand, within DvMF_2164at 2701.004 kb on + strand, within DvMF_2164at 2701.041 kb on - strand, within DvMF_2164at 2701.090 kb on + strandat 2701.150 kb on + strandat 2701.185 kb on - strandat 2701.201 kb on + strandat 2701.268 kb on - strandat 2701.308 kb on + strandat 2701.365 kb on - strandat 2701.490 kb on - strandat 2701.559 kb on + strandat 2701.635 kb on - strandat 2701.644 kb on - strand, within DvMF_2165at 2701.954 kb on + strand, within DvMF_2165at 2701.981 kb on + strand, within DvMF_2165at 2702.257 kb on - strand, within DvMF_2165at 2702.259 kb on + strand, within DvMF_2165at 2702.277 kb on + strandat 2702.577 kb on - strandat 2702.752 kb on + strand, within DvMF_2166at 2702.880 kb on + strand, within DvMF_2166at 2702.897 kb on + strand, within DvMF_2166at 2703.207 kb on + strand, within DvMF_2166

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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2,700,596 - DvMF_2164 0.51 -3.3
2,700,800 - DvMF_2164 0.68 -3.0
2,700,893 + DvMF_2164 0.75 -4.0
2,700,901 - DvMF_2164 0.76 -3.9
2,700,901 - DvMF_2164 0.76 -3.7
2,700,997 - DvMF_2164 0.84 -3.0
2,701,004 + DvMF_2164 0.84 -3.9
2,701,041 - DvMF_2164 0.87 -2.9
2,701,090 + -4.0
2,701,150 + -3.3
2,701,185 - -3.8
2,701,201 + -2.9
2,701,268 - -3.6
2,701,308 + -1.5
2,701,365 - -1.2
2,701,490 - +0.3
2,701,559 + +0.5
2,701,635 - +2.7
2,701,644 - DvMF_2165 0.10 +2.9
2,701,954 + DvMF_2165 0.49 +2.4
2,701,981 + DvMF_2165 0.53 +2.6
2,702,257 - DvMF_2165 0.88 +1.6
2,702,259 + DvMF_2165 0.88 +2.4
2,702,277 + +2.0
2,702,577 - -0.1
2,702,752 + DvMF_2166 0.11 +0.4
2,702,880 + DvMF_2166 0.26 -0.3
2,702,897 + DvMF_2166 0.28 -0.1
2,703,207 + DvMF_2166 0.64 +0.1

Or see this region's nucleotide sequence