Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_R0027 and DvMF_0918 are separated by 973 nucleotides DvMF_0918 and DvMF_0919 are separated by 22 nucleotides DvMF_0919 and DvMF_0920 are separated by 144 nucleotides
DvMF_R0027: DvMF_R0027 - 16S ribosomal RNA (RefSeq), at 1,108,180 to 1,109,715
_R0027
DvMF_0918: DvMF_0918 - hypothetical protein (RefSeq), at 1,110,689 to 1,111,306
_0918
DvMF_0919: DvMF_0919 - hypothetical protein (RefSeq), at 1,111,329 to 1,111,865
_0919
DvMF_0920: DvMF_0920 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,112,010 to 1,113,041
_0920
Position (kb) 1110
1111
1112 Strain fitness (log2 ratio) -1
0
1 at 1109.840 kb on + strand at 1109.986 kb on + strand at 1110.754 kb on + strand, within DvMF_0918 at 1110.759 kb on + strand, within DvMF_0918 at 1110.762 kb on - strand, within DvMF_0918 at 1110.826 kb on + strand, within DvMF_0918 at 1110.984 kb on - strand, within DvMF_0918 at 1111.108 kb on + strand, within DvMF_0918 at 1111.450 kb on + strand, within DvMF_0919 at 1111.462 kb on + strand, within DvMF_0919 at 1111.529 kb on - strand, within DvMF_0919 at 1111.560 kb on + strand, within DvMF_0919 at 1111.816 kb on + strand at 1111.868 kb on - strand at 1112.189 kb on - strand, within DvMF_0920 at 1112.203 kb on - strand, within DvMF_0920
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml remove 1,109,840 + +0.6 1,109,986 + -0.3 1,110,754 + DvMF_0918 0.11 -1.1 1,110,759 + DvMF_0918 0.11 +0.3 1,110,762 - DvMF_0918 0.12 -0.9 1,110,826 + DvMF_0918 0.22 -0.5 1,110,984 - DvMF_0918 0.48 -0.2 1,111,108 + DvMF_0918 0.68 -1.3 1,111,450 + DvMF_0919 0.23 +0.4 1,111,462 + DvMF_0919 0.25 -0.3 1,111,529 - DvMF_0919 0.37 -1.4 1,111,560 + DvMF_0919 0.43 -0.2 1,111,816 + -0.1 1,111,868 - -0.1 1,112,189 - DvMF_0920 0.17 -0.9 1,112,203 - DvMF_0920 0.19 -1.4
Or see this region's nucleotide sequence