Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3555 and Shewana3_3556 overlap by 8 nucleotides Shewana3_3556 and Shewana3_3557 overlap by 14 nucleotides Shewana3_3557 and Shewana3_3558 overlap by 4 nucleotides
Shewana3_3555: Shewana3_3555 - von Willebrand factor, type A (RefSeq), at 4,262,666 to 4,264,387
_3555
Shewana3_3556: Shewana3_3556 - von Willebrand factor, type A (RefSeq), at 4,264,380 to 4,265,387
_3556
Shewana3_3557: Shewana3_3557 - hypothetical protein (RefSeq), at 4,265,374 to 4,265,892
_3557
Shewana3_3558: Shewana3_3558 - hypothetical protein (RefSeq), at 4,265,889 to 4,266,881
_3558
Position (kb)
4264
4265
4266 Strain fitness (log2 ratio)
-2
-1
0
1 at 4263.396 kb on - strand, within Shewana3_3555 at 4263.410 kb on + strand, within Shewana3_3555 at 4263.494 kb on + strand, within Shewana3_3555 at 4263.835 kb on - strand, within Shewana3_3555 at 4263.868 kb on + strand, within Shewana3_3555 at 4263.868 kb on + strand, within Shewana3_3555 at 4263.876 kb on - strand, within Shewana3_3555 at 4263.876 kb on - strand, within Shewana3_3555 at 4263.888 kb on + strand, within Shewana3_3555 at 4263.888 kb on + strand, within Shewana3_3555 at 4264.084 kb on - strand, within Shewana3_3555 at 4264.132 kb on + strand, within Shewana3_3555 at 4264.594 kb on - strand, within Shewana3_3556 at 4264.614 kb on + strand, within Shewana3_3556 at 4264.781 kb on + strand, within Shewana3_3556 at 4265.111 kb on + strand, within Shewana3_3556 at 4265.123 kb on + strand, within Shewana3_3556 at 4265.181 kb on + strand, within Shewana3_3556 at 4265.259 kb on - strand, within Shewana3_3556 at 4265.424 kb on + strand at 4265.432 kb on - strand, within Shewana3_3557 at 4265.537 kb on - strand, within Shewana3_3557 at 4265.594 kb on + strand, within Shewana3_3557 at 4265.602 kb on - strand, within Shewana3_3557 at 4266.109 kb on - strand, within Shewana3_3558 at 4266.255 kb on - strand, within Shewana3_3558 at 4266.376 kb on + strand, within Shewana3_3558
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 4,263,396 - Shewana3_3555 0.42 -1.8 4,263,410 + Shewana3_3555 0.43 -0.6 4,263,494 + Shewana3_3555 0.48 +0.5 4,263,835 - Shewana3_3555 0.68 -0.1 4,263,868 + Shewana3_3555 0.70 +0.1 4,263,868 + Shewana3_3555 0.70 +0.4 4,263,876 - Shewana3_3555 0.70 -0.2 4,263,876 - Shewana3_3555 0.70 -0.6 4,263,888 + Shewana3_3555 0.71 +0.7 4,263,888 + Shewana3_3555 0.71 -0.3 4,264,084 - Shewana3_3555 0.82 -0.3 4,264,132 + Shewana3_3555 0.85 +0.4 4,264,594 - Shewana3_3556 0.21 +0.1 4,264,614 + Shewana3_3556 0.23 +0.5 4,264,781 + Shewana3_3556 0.40 +0.0 4,265,111 + Shewana3_3556 0.73 +0.2 4,265,123 + Shewana3_3556 0.74 +0.1 4,265,181 + Shewana3_3556 0.79 +0.1 4,265,259 - Shewana3_3556 0.87 +0.0 4,265,424 + -0.1 4,265,432 - Shewana3_3557 0.11 +0.9 4,265,537 - Shewana3_3557 0.31 -0.2 4,265,594 + Shewana3_3557 0.42 -0.5 4,265,602 - Shewana3_3557 0.44 +0.0 4,266,109 - Shewana3_3558 0.22 -0.1 4,266,255 - Shewana3_3558 0.37 -0.4 4,266,376 + Shewana3_3558 0.49 -0.2
Or see this region's nucleotide sequence