Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3141

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3138 and Shewana3_3139 are separated by 64 nucleotidesShewana3_3139 and rpsT are separated by 83 nucleotidesrpsT and Shewana3_3141 are separated by 60 nucleotidesShewana3_3141 and Shewana3_3142 are separated by 135 nucleotides Shewana3_3138: Shewana3_3138 - integral membrane protein MviN (RefSeq), at 3,764,547 to 3,766,106 _3138 Shewana3_3139: Shewana3_3139 - hypothetical protein (RefSeq), at 3,766,171 to 3,766,275 _3139 Shewana3_3140: rpsT - 30S ribosomal protein S20 (RefSeq), at 3,766,359 to 3,766,625 rpsT Shewana3_3141: Shewana3_3141 - ArsR family transcriptional regulator (RefSeq), at 3,766,686 to 3,766,982 _3141 Shewana3_3142: Shewana3_3142 - peptidase M28 (RefSeq), at 3,767,118 to 3,768,524 _3142 Position (kb) 3766 3767Strain fitness (log2 ratio) -1 0 1at 3766.125 kb on - strandat 3766.176 kb on - strandat 3766.854 kb on + strand, within Shewana3_3141at 3766.932 kb on + strand, within Shewana3_3141at 3766.954 kb on + strandat 3766.962 kb on - strandat 3767.002 kb on + strandat 3767.026 kb on - strandat 3767.043 kb on - strandat 3767.045 kb on - strandat 3767.164 kb on + strandat 3767.183 kb on - strandat 3767.183 kb on - strandat 3767.240 kb on + strandat 3767.316 kb on - strand, within Shewana3_3142at 3767.333 kb on - strand, within Shewana3_3142at 3767.616 kb on + strand, within Shewana3_3142at 3767.624 kb on - strand, within Shewana3_3142at 3767.645 kb on - strand, within Shewana3_3142at 3767.710 kb on + strand, within Shewana3_3142at 3767.715 kb on + strand, within Shewana3_3142at 3767.715 kb on + strand, within Shewana3_3142at 3767.715 kb on + strand, within Shewana3_3142at 3767.715 kb on + strand, within Shewana3_3142at 3767.743 kb on - strand, within Shewana3_3142at 3767.797 kb on - strand, within Shewana3_3142at 3767.855 kb on + strand, within Shewana3_3142

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,766,125 - +0.0
3,766,176 - -1.0
3,766,854 + Shewana3_3141 0.57 +0.4
3,766,932 + Shewana3_3141 0.83 +0.7
3,766,954 + -0.7
3,766,962 - +0.3
3,767,002 + +0.1
3,767,026 - -0.3
3,767,043 - -1.6
3,767,045 - -1.4
3,767,164 + -1.2
3,767,183 - +0.1
3,767,183 - +0.7
3,767,240 + -0.2
3,767,316 - Shewana3_3142 0.14 +0.7
3,767,333 - Shewana3_3142 0.15 -0.2
3,767,616 + Shewana3_3142 0.35 -0.9
3,767,624 - Shewana3_3142 0.36 +0.5
3,767,645 - Shewana3_3142 0.37 -1.4
3,767,710 + Shewana3_3142 0.42 -1.4
3,767,715 + Shewana3_3142 0.42 -0.6
3,767,715 + Shewana3_3142 0.42 -0.7
3,767,715 + Shewana3_3142 0.42 +0.7
3,767,715 + Shewana3_3142 0.42 -0.4
3,767,743 - Shewana3_3142 0.44 +0.1
3,767,797 - Shewana3_3142 0.48 -0.0
3,767,855 + Shewana3_3142 0.52 -0.6

Or see this region's nucleotide sequence