Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2768

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2767 and Shewana3_2768 overlap by 1 nucleotidesShewana3_2768 and Shewana3_2769 are separated by 64 nucleotides Shewana3_2767: Shewana3_2767 - enoyl-CoA hydratase/isomerase (RefSeq), at 3,305,352 to 3,306,503 _2767 Shewana3_2768: Shewana3_2768 - enoyl-CoA hydratase (RefSeq), at 3,306,503 to 3,307,276 _2768 Shewana3_2769: Shewana3_2769 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data), at 3,307,341 to 3,308,498 _2769 Position (kb) 3306 3307 3308Strain fitness (log2 ratio) -3 -2 -1 0 1at 3305.510 kb on + strand, within Shewana3_2767at 3305.675 kb on - strand, within Shewana3_2767at 3305.704 kb on - strand, within Shewana3_2767at 3305.873 kb on - strand, within Shewana3_2767at 3305.978 kb on + strand, within Shewana3_2767at 3305.986 kb on - strand, within Shewana3_2767at 3306.124 kb on + strand, within Shewana3_2767at 3306.124 kb on + strand, within Shewana3_2767at 3306.299 kb on + strand, within Shewana3_2767at 3306.522 kb on + strandat 3306.560 kb on - strandat 3306.785 kb on - strand, within Shewana3_2768at 3306.800 kb on - strand, within Shewana3_2768at 3306.826 kb on - strand, within Shewana3_2768at 3306.837 kb on - strand, within Shewana3_2768at 3306.874 kb on - strand, within Shewana3_2768at 3306.879 kb on - strand, within Shewana3_2768at 3306.882 kb on + strand, within Shewana3_2768at 3306.951 kb on - strand, within Shewana3_2768at 3307.167 kb on + strand, within Shewana3_2768at 3307.176 kb on - strand, within Shewana3_2768at 3307.208 kb on - strandat 3307.256 kb on + strandat 3307.320 kb on + strandat 3307.458 kb on + strand, within Shewana3_2769at 3307.576 kb on - strand, within Shewana3_2769at 3307.728 kb on + strand, within Shewana3_2769at 3307.728 kb on + strand, within Shewana3_2769at 3307.736 kb on - strand, within Shewana3_2769at 3307.736 kb on - strand, within Shewana3_2769at 3307.845 kb on + strand, within Shewana3_2769at 3307.985 kb on - strand, within Shewana3_2769at 3308.002 kb on + strand, within Shewana3_2769at 3308.010 kb on - strand, within Shewana3_2769at 3308.178 kb on - strand, within Shewana3_2769at 3308.184 kb on - strand, within Shewana3_2769at 3308.186 kb on + strand, within Shewana3_2769

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,305,510 + Shewana3_2767 0.14 -1.3
3,305,675 - Shewana3_2767 0.28 -2.3
3,305,704 - Shewana3_2767 0.31 -2.1
3,305,873 - Shewana3_2767 0.45 -0.2
3,305,978 + Shewana3_2767 0.54 -1.6
3,305,986 - Shewana3_2767 0.55 -3.7
3,306,124 + Shewana3_2767 0.67 -2.3
3,306,124 + Shewana3_2767 0.67 -1.5
3,306,299 + Shewana3_2767 0.82 -1.2
3,306,522 + -2.0
3,306,560 - -1.6
3,306,785 - Shewana3_2768 0.36 +1.0
3,306,800 - Shewana3_2768 0.38 -0.3
3,306,826 - Shewana3_2768 0.42 +1.6
3,306,837 - Shewana3_2768 0.43 -0.8
3,306,874 - Shewana3_2768 0.48 -2.3
3,306,879 - Shewana3_2768 0.49 -0.5
3,306,882 + Shewana3_2768 0.49 -0.1
3,306,951 - Shewana3_2768 0.58 -0.0
3,307,167 + Shewana3_2768 0.86 -0.6
3,307,176 - Shewana3_2768 0.87 -1.8
3,307,208 - +0.0
3,307,256 + -0.3
3,307,320 + +0.4
3,307,458 + Shewana3_2769 0.10 -0.5
3,307,576 - Shewana3_2769 0.20 -0.8
3,307,728 + Shewana3_2769 0.33 -2.1
3,307,728 + Shewana3_2769 0.33 -0.1
3,307,736 - Shewana3_2769 0.34 -1.0
3,307,736 - Shewana3_2769 0.34 -1.0
3,307,845 + Shewana3_2769 0.44 -0.4
3,307,985 - Shewana3_2769 0.56 +0.5
3,308,002 + Shewana3_2769 0.57 -1.4
3,308,010 - Shewana3_2769 0.58 -0.6
3,308,178 - Shewana3_2769 0.72 -0.7
3,308,184 - Shewana3_2769 0.73 -0.6
3,308,186 + Shewana3_2769 0.73 -2.1

Or see this region's nucleotide sequence