Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2689 and Shewana3_2690 are separated by 142 nucleotides Shewana3_2690 and Shewana3_2691 are separated by 13 nucleotides Shewana3_2691 and Shewana3_2692 are separated by 106 nucleotides Shewana3_2692 and Shewana3_2693 are separated by 169 nucleotides
Shewana3_2689: Shewana3_2689 - hypothetical protein (RefSeq), at 3,216,571 to 3,216,978
_2689
Shewana3_2690: Shewana3_2690 - short chain dehydrogenase (RefSeq), at 3,217,121 to 3,217,888
_2690
Shewana3_2691: Shewana3_2691 - DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada (RefSeq), at 3,217,902 to 3,218,795
_2691
Shewana3_2692: Shewana3_2692 - streptogramin A acetyl transferase (RefSeq), at 3,218,902 to 3,219,576
_2692
Shewana3_2693: Shewana3_2693 - AraC family transcriptional regulator (RefSeq), at 3,219,746 to 3,220,582
_2693
Position (kb)
3217
3218
3219 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3216.973 kb on + strand at 3216.973 kb on + strand at 3216.988 kb on + strand at 3217.057 kb on + strand at 3217.183 kb on - strand at 3217.275 kb on - strand, within Shewana3_2690 at 3217.321 kb on + strand, within Shewana3_2690 at 3217.328 kb on - strand, within Shewana3_2690 at 3217.573 kb on - strand, within Shewana3_2690 at 3217.659 kb on + strand, within Shewana3_2690 at 3217.876 kb on + strand at 3218.085 kb on - strand, within Shewana3_2691 at 3218.140 kb on + strand, within Shewana3_2691 at 3218.148 kb on - strand, within Shewana3_2691 at 3218.153 kb on - strand, within Shewana3_2691 at 3218.184 kb on - strand, within Shewana3_2691 at 3218.222 kb on + strand, within Shewana3_2691 at 3218.363 kb on + strand, within Shewana3_2691 at 3218.478 kb on + strand, within Shewana3_2691 at 3218.509 kb on - strand, within Shewana3_2691 at 3218.527 kb on + strand, within Shewana3_2691 at 3218.535 kb on - strand, within Shewana3_2691 at 3218.535 kb on - strand, within Shewana3_2691 at 3218.535 kb on - strand, within Shewana3_2691 at 3218.535 kb on - strand, within Shewana3_2691 at 3218.673 kb on - strand, within Shewana3_2691 at 3218.788 kb on - strand at 3218.822 kb on - strand at 3218.864 kb on + strand at 3218.930 kb on + strand at 3219.041 kb on + strand, within Shewana3_2692 at 3219.175 kb on + strand, within Shewana3_2692 at 3219.183 kb on - strand, within Shewana3_2692 at 3219.286 kb on - strand, within Shewana3_2692 at 3219.303 kb on - strand, within Shewana3_2692 at 3219.320 kb on + strand, within Shewana3_2692 at 3219.598 kb on + strand at 3219.785 kb on - strand at 3219.792 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 3,216,973 + -0.0 3,216,973 + -0.5 3,216,988 + -0.3 3,217,057 + +1.2 3,217,183 - -0.6 3,217,275 - Shewana3_2690 0.20 -0.4 3,217,321 + Shewana3_2690 0.26 +0.6 3,217,328 - Shewana3_2690 0.27 -0.0 3,217,573 - Shewana3_2690 0.59 -1.8 3,217,659 + Shewana3_2690 0.70 -1.3 3,217,876 + -1.0 3,218,085 - Shewana3_2691 0.20 +0.3 3,218,140 + Shewana3_2691 0.27 +1.2 3,218,148 - Shewana3_2691 0.28 +0.4 3,218,153 - Shewana3_2691 0.28 +0.9 3,218,184 - Shewana3_2691 0.32 +0.8 3,218,222 + Shewana3_2691 0.36 -1.5 3,218,363 + Shewana3_2691 0.52 -0.8 3,218,478 + Shewana3_2691 0.64 -1.8 3,218,509 - Shewana3_2691 0.68 -0.8 3,218,527 + Shewana3_2691 0.70 -0.6 3,218,535 - Shewana3_2691 0.71 +0.8 3,218,535 - Shewana3_2691 0.71 +1.9 3,218,535 - Shewana3_2691 0.71 +0.2 3,218,535 - Shewana3_2691 0.71 +0.2 3,218,673 - Shewana3_2691 0.86 +0.2 3,218,788 - -1.0 3,218,822 - +0.6 3,218,864 + -0.5 3,218,930 + +0.8 3,219,041 + Shewana3_2692 0.21 +0.7 3,219,175 + Shewana3_2692 0.40 -0.3 3,219,183 - Shewana3_2692 0.42 +0.1 3,219,286 - Shewana3_2692 0.57 +0.3 3,219,303 - Shewana3_2692 0.59 -0.7 3,219,320 + Shewana3_2692 0.62 -1.2 3,219,598 + -0.9 3,219,785 - +0.1 3,219,792 + +0.3
Or see this region's nucleotide sequence