Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2523

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2522 and Shewana3_2523 are separated by 175 nucleotidesShewana3_2523 and Shewana3_2524 are separated by 226 nucleotides Shewana3_2522: Shewana3_2522 - multi-sensor hybrid histidine kinase (RefSeq), at 3,015,742 to 3,019,182 _2522 Shewana3_2523: Shewana3_2523 - acetyl-CoA synthetase (RefSeq), at 3,019,358 to 3,021,310 _2523 Shewana3_2524: Shewana3_2524 - type III restriction enzyme, res subunit (RefSeq), at 3,021,537 to 3,023,309 _2524 Position (kb) 3019 3020 3021 3022Strain fitness (log2 ratio) -2 -1 0 1 2at 3018.383 kb on - strand, within Shewana3_2522at 3018.397 kb on - strand, within Shewana3_2522at 3018.407 kb on + strand, within Shewana3_2522at 3018.446 kb on + strand, within Shewana3_2522at 3018.469 kb on + strand, within Shewana3_2522at 3018.796 kb on + strand, within Shewana3_2522at 3018.822 kb on + strand, within Shewana3_2522at 3018.850 kb on - strandat 3018.944 kb on - strandat 3019.117 kb on + strandat 3019.507 kb on + strandat 3019.886 kb on - strand, within Shewana3_2523at 3020.167 kb on + strand, within Shewana3_2523at 3020.167 kb on + strand, within Shewana3_2523at 3020.306 kb on + strand, within Shewana3_2523at 3020.306 kb on + strand, within Shewana3_2523at 3020.365 kb on + strandat 3020.373 kb on - strand, within Shewana3_2523at 3020.738 kb on - strand, within Shewana3_2523at 3020.838 kb on + strand, within Shewana3_2523at 3021.004 kb on - strand, within Shewana3_2523at 3021.060 kb on + strand, within Shewana3_2523at 3021.068 kb on - strand, within Shewana3_2523at 3021.166 kb on - strandat 3021.354 kb on + strandat 3021.354 kb on + strandat 3021.498 kb on - strandat 3021.498 kb on - strandat 3021.498 kb on - strandat 3021.644 kb on - strandat 3021.722 kb on - strand, within Shewana3_2524at 3021.961 kb on + strand, within Shewana3_2524

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
3,018,383 - Shewana3_2522 0.77 -2.0
3,018,397 - Shewana3_2522 0.77 -1.8
3,018,407 + Shewana3_2522 0.77 -1.7
3,018,446 + Shewana3_2522 0.79 +0.3
3,018,469 + Shewana3_2522 0.79 -0.6
3,018,796 + Shewana3_2522 0.89 -2.2
3,018,822 + Shewana3_2522 0.90 -0.1
3,018,850 - +0.1
3,018,944 - +0.1
3,019,117 + -0.9
3,019,507 + -0.3
3,019,886 - Shewana3_2523 0.27 -0.2
3,020,167 + Shewana3_2523 0.41 -0.5
3,020,167 + Shewana3_2523 0.41 +0.4
3,020,306 + Shewana3_2523 0.49 -1.1
3,020,306 + Shewana3_2523 0.49 -0.3
3,020,365 + +2.1
3,020,373 - Shewana3_2523 0.52 +0.8
3,020,738 - Shewana3_2523 0.71 -0.3
3,020,838 + Shewana3_2523 0.76 +0.3
3,021,004 - Shewana3_2523 0.84 -1.2
3,021,060 + Shewana3_2523 0.87 +0.2
3,021,068 - Shewana3_2523 0.88 -0.8
3,021,166 - -1.0
3,021,354 + +0.1
3,021,354 + -0.2
3,021,498 - -1.0
3,021,498 - -0.2
3,021,498 - +0.3
3,021,644 - +0.2
3,021,722 - Shewana3_2524 0.10 -0.0
3,021,961 + Shewana3_2524 0.24 +0.5

Or see this region's nucleotide sequence