Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2147

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2145 and Shewana3_2146 are separated by 254 nucleotidesShewana3_2146 and Shewana3_2147 are separated by 25 nucleotidesShewana3_2147 and Shewana3_2148 are separated by 70 nucleotidesShewana3_2148 and Shewana3_2149 are separated by 20 nucleotides Shewana3_2145: Shewana3_2145 - aminotransferase AlaT (RefSeq), at 2,569,796 to 2,571,010 _2145 Shewana3_2146: Shewana3_2146 - hypothetical protein (RefSeq), at 2,571,265 to 2,571,852 _2146 Shewana3_2147: Shewana3_2147 - deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq), at 2,571,878 to 2,573,218 _2147 Shewana3_2148: Shewana3_2148 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq), at 2,573,289 to 2,573,930 _2148 Shewana3_2149: Shewana3_2149 - phosphogluconate dehydratase (RefSeq), at 2,573,951 to 2,575,777 _2149 Position (kb) 2571 2572 2573 2574Strain fitness (log2 ratio) -2 -1 0 1at 2570.915 kb on - strandat 2571.042 kb on + strandat 2571.564 kb on + strand, within Shewana3_2146at 2571.986 kb on + strandat 2572.052 kb on + strand, within Shewana3_2147at 2572.423 kb on + strand, within Shewana3_2147at 2572.664 kb on + strand, within Shewana3_2147at 2572.779 kb on + strand, within Shewana3_2147at 2572.996 kb on - strand, within Shewana3_2147at 2573.153 kb on + strandat 2574.181 kb on - strand, within Shewana3_2149

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,570,915 - -0.5
2,571,042 + -0.3
2,571,564 + Shewana3_2146 0.51 -2.0
2,571,986 + +0.0
2,572,052 + Shewana3_2147 0.13 -0.3
2,572,423 + Shewana3_2147 0.41 -0.5
2,572,664 + Shewana3_2147 0.59 -1.7
2,572,779 + Shewana3_2147 0.67 -0.7
2,572,996 - Shewana3_2147 0.83 -1.0
2,573,153 + +0.4
2,574,181 - Shewana3_2149 0.13 -0.7

Or see this region's nucleotide sequence