Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2049

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2048 and Shewana3_2049 are separated by 180 nucleotidesShewana3_2049 and Shewana3_2050 are separated by 321 nucleotides Shewana3_2048: Shewana3_2048 - L-alanine dehydrogenase (RefSeq), at 2,455,794 to 2,456,909 _2048 Shewana3_2049: Shewana3_2049 - leucine-responsive transcriptional regulator (RefSeq), at 2,457,090 to 2,457,596 _2049 Shewana3_2050: Shewana3_2050 - DNA translocase FtsK (RefSeq), at 2,457,918 to 2,460,671 _2050 Position (kb) 2457 2458Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2456.135 kb on - strand, within Shewana3_2048at 2456.364 kb on + strand, within Shewana3_2048at 2456.672 kb on - strand, within Shewana3_2048at 2456.692 kb on - strand, within Shewana3_2048at 2456.993 kb on + strandat 2457.004 kb on - strandat 2457.004 kb on - strandat 2457.191 kb on + strand, within Shewana3_2049at 2457.191 kb on + strand, within Shewana3_2049at 2457.199 kb on - strand, within Shewana3_2049at 2457.219 kb on - strand, within Shewana3_2049at 2457.365 kb on + strand, within Shewana3_2049at 2457.378 kb on + strand, within Shewana3_2049at 2458.576 kb on + strand, within Shewana3_2050

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,456,135 - Shewana3_2048 0.31 -2.7
2,456,364 + Shewana3_2048 0.51 -3.1
2,456,672 - Shewana3_2048 0.79 -3.0
2,456,692 - Shewana3_2048 0.80 -4.6
2,456,993 + -3.1
2,457,004 - -0.5
2,457,004 - -0.4
2,457,191 + Shewana3_2049 0.20 +1.1
2,457,191 + Shewana3_2049 0.20 +0.3
2,457,199 - Shewana3_2049 0.21 +0.7
2,457,219 - Shewana3_2049 0.25 -1.0
2,457,365 + Shewana3_2049 0.54 +0.2
2,457,378 + Shewana3_2049 0.57 +1.0
2,458,576 + Shewana3_2050 0.24 +0.9

Or see this region's nucleotide sequence