Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1737

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1736 and Shewana3_1737 are separated by 99 nucleotidesShewana3_1737 and Shewana3_1738 are separated by 88 nucleotidesShewana3_1738 and Shewana3_1739 are separated by 138 nucleotides Shewana3_1736: Shewana3_1736 - phosphoenolpyruvate synthase (RefSeq), at 2,044,309 to 2,046,678 _1736 Shewana3_1737: Shewana3_1737 - FAD linked oxidase domain-containing protein (RefSeq), at 2,046,778 to 2,049,819 _1737 Shewana3_1738: Shewana3_1738 - hypothetical protein (RefSeq), at 2,049,908 to 2,050,396 _1738 Shewana3_1739: Shewana3_1739 - MarR family transcriptional regulator (RefSeq), at 2,050,535 to 2,050,966 _1739 Position (kb) 2046 2047 2048 2049 2050Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2045.966 kb on - strand, within Shewana3_1736at 2046.293 kb on + strand, within Shewana3_1736at 2046.378 kb on + strand, within Shewana3_1736at 2046.779 kb on + strandat 2046.876 kb on + strandat 2046.876 kb on + strandat 2046.884 kb on - strandat 2047.018 kb on - strandat 2047.118 kb on + strand, within Shewana3_1737at 2047.126 kb on - strand, within Shewana3_1737at 2047.128 kb on + strand, within Shewana3_1737at 2047.227 kb on - strand, within Shewana3_1737at 2047.380 kb on - strand, within Shewana3_1737at 2047.535 kb on + strand, within Shewana3_1737at 2047.535 kb on + strand, within Shewana3_1737at 2047.629 kb on - strand, within Shewana3_1737at 2047.861 kb on - strand, within Shewana3_1737at 2048.104 kb on + strand, within Shewana3_1737at 2048.189 kb on - strand, within Shewana3_1737at 2048.306 kb on + strand, within Shewana3_1737at 2048.328 kb on + strand, within Shewana3_1737at 2048.441 kb on + strand, within Shewana3_1737at 2048.588 kb on + strand, within Shewana3_1737at 2048.614 kb on + strand, within Shewana3_1737at 2048.614 kb on + strand, within Shewana3_1737at 2048.614 kb on + strand, within Shewana3_1737at 2048.739 kb on + strand, within Shewana3_1737at 2048.983 kb on - strand, within Shewana3_1737at 2048.983 kb on - strand, within Shewana3_1737at 2049.022 kb on - strand, within Shewana3_1737at 2049.319 kb on + strand, within Shewana3_1737at 2049.327 kb on - strand, within Shewana3_1737at 2050.046 kb on + strand, within Shewana3_1738at 2050.054 kb on - strand, within Shewana3_1738at 2050.056 kb on + strand, within Shewana3_1738at 2050.056 kb on + strand, within Shewana3_1738

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,045,966 - Shewana3_1736 0.70 -3.8
2,046,293 + Shewana3_1736 0.84 -1.2
2,046,378 + Shewana3_1736 0.87 -4.2
2,046,779 + +0.4
2,046,876 + -1.6
2,046,876 + -1.8
2,046,884 - -1.9
2,047,018 - +0.7
2,047,118 + Shewana3_1737 0.11 -2.0
2,047,126 - Shewana3_1737 0.11 -0.9
2,047,128 + Shewana3_1737 0.12 -1.6
2,047,227 - Shewana3_1737 0.15 -1.2
2,047,380 - Shewana3_1737 0.20 -0.9
2,047,535 + Shewana3_1737 0.25 -0.6
2,047,535 + Shewana3_1737 0.25 -1.5
2,047,629 - Shewana3_1737 0.28 -2.0
2,047,861 - Shewana3_1737 0.36 -1.9
2,048,104 + Shewana3_1737 0.44 -1.5
2,048,189 - Shewana3_1737 0.46 -1.1
2,048,306 + Shewana3_1737 0.50 -1.0
2,048,328 + Shewana3_1737 0.51 -0.8
2,048,441 + Shewana3_1737 0.55 -1.3
2,048,588 + Shewana3_1737 0.60 -1.5
2,048,614 + Shewana3_1737 0.60 -0.3
2,048,614 + Shewana3_1737 0.60 -0.6
2,048,614 + Shewana3_1737 0.60 -1.6
2,048,739 + Shewana3_1737 0.64 -0.9
2,048,983 - Shewana3_1737 0.72 -0.9
2,048,983 - Shewana3_1737 0.72 -0.4
2,049,022 - Shewana3_1737 0.74 -0.8
2,049,319 + Shewana3_1737 0.84 -1.1
2,049,327 - Shewana3_1737 0.84 -1.3
2,050,046 + Shewana3_1738 0.28 +0.2
2,050,054 - Shewana3_1738 0.30 +0.5
2,050,056 + Shewana3_1738 0.30 +0.4
2,050,056 + Shewana3_1738 0.30 -0.6

Or see this region's nucleotide sequence