Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1736 and Shewana3_1737 are separated by 99 nucleotides Shewana3_1737 and Shewana3_1738 are separated by 88 nucleotides Shewana3_1738 and Shewana3_1739 are separated by 138 nucleotides
Shewana3_1736: Shewana3_1736 - phosphoenolpyruvate synthase (RefSeq), at 2,044,309 to 2,046,678
_1736
Shewana3_1737: Shewana3_1737 - FAD linked oxidase domain-containing protein (RefSeq), at 2,046,778 to 2,049,819
_1737
Shewana3_1738: Shewana3_1738 - hypothetical protein (RefSeq), at 2,049,908 to 2,050,396
_1738
Shewana3_1739: Shewana3_1739 - MarR family transcriptional regulator (RefSeq), at 2,050,535 to 2,050,966
_1739
Position (kb)
2046
2047
2048
2049
2050 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2045.966 kb on - strand, within Shewana3_1736 at 2046.293 kb on + strand, within Shewana3_1736 at 2046.378 kb on + strand, within Shewana3_1736 at 2046.779 kb on + strand at 2046.876 kb on + strand at 2046.876 kb on + strand at 2046.884 kb on - strand at 2047.018 kb on - strand at 2047.118 kb on + strand, within Shewana3_1737 at 2047.126 kb on - strand, within Shewana3_1737 at 2047.128 kb on + strand, within Shewana3_1737 at 2047.227 kb on - strand, within Shewana3_1737 at 2047.380 kb on - strand, within Shewana3_1737 at 2047.535 kb on + strand, within Shewana3_1737 at 2047.535 kb on + strand, within Shewana3_1737 at 2047.629 kb on - strand, within Shewana3_1737 at 2047.861 kb on - strand, within Shewana3_1737 at 2048.104 kb on + strand, within Shewana3_1737 at 2048.189 kb on - strand, within Shewana3_1737 at 2048.306 kb on + strand, within Shewana3_1737 at 2048.328 kb on + strand, within Shewana3_1737 at 2048.441 kb on + strand, within Shewana3_1737 at 2048.588 kb on + strand, within Shewana3_1737 at 2048.614 kb on + strand, within Shewana3_1737 at 2048.614 kb on + strand, within Shewana3_1737 at 2048.614 kb on + strand, within Shewana3_1737 at 2048.739 kb on + strand, within Shewana3_1737 at 2048.983 kb on - strand, within Shewana3_1737 at 2048.983 kb on - strand, within Shewana3_1737 at 2049.022 kb on - strand, within Shewana3_1737 at 2049.319 kb on + strand, within Shewana3_1737 at 2049.327 kb on - strand, within Shewana3_1737 at 2050.046 kb on + strand, within Shewana3_1738 at 2050.054 kb on - strand, within Shewana3_1738 at 2050.056 kb on + strand, within Shewana3_1738 at 2050.056 kb on + strand, within Shewana3_1738
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 2,045,966 - Shewana3_1736 0.70 -3.8 2,046,293 + Shewana3_1736 0.84 -1.2 2,046,378 + Shewana3_1736 0.87 -4.2 2,046,779 + +0.4 2,046,876 + -1.6 2,046,876 + -1.8 2,046,884 - -1.9 2,047,018 - +0.7 2,047,118 + Shewana3_1737 0.11 -2.0 2,047,126 - Shewana3_1737 0.11 -0.9 2,047,128 + Shewana3_1737 0.12 -1.6 2,047,227 - Shewana3_1737 0.15 -1.2 2,047,380 - Shewana3_1737 0.20 -0.9 2,047,535 + Shewana3_1737 0.25 -0.6 2,047,535 + Shewana3_1737 0.25 -1.5 2,047,629 - Shewana3_1737 0.28 -2.0 2,047,861 - Shewana3_1737 0.36 -1.9 2,048,104 + Shewana3_1737 0.44 -1.5 2,048,189 - Shewana3_1737 0.46 -1.1 2,048,306 + Shewana3_1737 0.50 -1.0 2,048,328 + Shewana3_1737 0.51 -0.8 2,048,441 + Shewana3_1737 0.55 -1.3 2,048,588 + Shewana3_1737 0.60 -1.5 2,048,614 + Shewana3_1737 0.60 -0.3 2,048,614 + Shewana3_1737 0.60 -0.6 2,048,614 + Shewana3_1737 0.60 -1.6 2,048,739 + Shewana3_1737 0.64 -0.9 2,048,983 - Shewana3_1737 0.72 -0.9 2,048,983 - Shewana3_1737 0.72 -0.4 2,049,022 - Shewana3_1737 0.74 -0.8 2,049,319 + Shewana3_1737 0.84 -1.1 2,049,327 - Shewana3_1737 0.84 -1.3 2,050,046 + Shewana3_1738 0.28 +0.2 2,050,054 - Shewana3_1738 0.30 +0.5 2,050,056 + Shewana3_1738 0.30 +0.4 2,050,056 + Shewana3_1738 0.30 -0.6
Or see this region's nucleotide sequence