Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0748 and Shewana3_0749 are separated by 24 nucleotides Shewana3_0749 and Shewana3_0750 are separated by 66 nucleotides Shewana3_0750 and Shewana3_0751 are separated by 266 nucleotides Shewana3_0751 and Shewana3_0752 are separated by 144 nucleotides
Shewana3_0748: Shewana3_0748 - phosphoesterase, PA-phosphatase related (RefSeq), at 868,504 to 869,031
_0748
Shewana3_0749: Shewana3_0749 - hypothetical protein (RefSeq), at 869,056 to 869,490
_0749
Shewana3_0750: Shewana3_0750 - malate dehydrogenase (RefSeq), at 869,557 to 871,245
_0750
Shewana3_0751: Shewana3_0751 - hypothetical protein (RefSeq), at 871,512 to 871,982
_0751
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Position (kb)
869
870
871
872 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.689 kb on - strand, within Shewana3_0748 at 868.707 kb on + strand, within Shewana3_0748 at 868.792 kb on - strand, within Shewana3_0748 at 868.956 kb on + strand, within Shewana3_0748 at 868.981 kb on + strand at 869.079 kb on - strand at 869.162 kb on - strand, within Shewana3_0749 at 869.395 kb on + strand, within Shewana3_0749 at 869.473 kb on - strand at 869.484 kb on + strand at 869.642 kb on + strand at 869.661 kb on - strand at 869.843 kb on - strand, within Shewana3_0750 at 869.844 kb on - strand, within Shewana3_0750 at 869.844 kb on - strand, within Shewana3_0750 at 869.929 kb on - strand, within Shewana3_0750 at 870.281 kb on + strand, within Shewana3_0750 at 870.700 kb on + strand, within Shewana3_0750 at 870.703 kb on - strand, within Shewana3_0750 at 870.782 kb on - strand, within Shewana3_0750 at 870.872 kb on + strand, within Shewana3_0750 at 870.880 kb on - strand, within Shewana3_0750 at 870.922 kb on + strand, within Shewana3_0750 at 870.978 kb on + strand, within Shewana3_0750 at 871.058 kb on + strand, within Shewana3_0750 at 871.058 kb on + strand, within Shewana3_0750 at 871.226 kb on - strand at 871.252 kb on + strand at 871.254 kb on - strand at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.826 kb on + strand, within Shewana3_0751 at 871.835 kb on - strand, within Shewana3_0751 at 871.869 kb on - strand, within Shewana3_0751 at 872.076 kb on + strand at 872.084 kb on - strand at 872.084 kb on - strand at 872.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 868,627 + Shewana3_0748 0.23 +1.8 868,627 + Shewana3_0748 0.23 -1.1 868,627 + Shewana3_0748 0.23 +0.8 868,689 - Shewana3_0748 0.35 +0.5 868,707 + Shewana3_0748 0.38 -1.4 868,792 - Shewana3_0748 0.55 +0.9 868,956 + Shewana3_0748 0.86 -1.1 868,981 + -0.2 869,079 - +1.0 869,162 - Shewana3_0749 0.24 -1.6 869,395 + Shewana3_0749 0.78 +0.4 869,473 - -0.6 869,484 + +0.6 869,642 + -1.9 869,661 - -0.8 869,843 - Shewana3_0750 0.17 -2.0 869,844 - Shewana3_0750 0.17 -2.3 869,844 - Shewana3_0750 0.17 -1.1 869,929 - Shewana3_0750 0.22 -2.7 870,281 + Shewana3_0750 0.43 -1.2 870,700 + Shewana3_0750 0.68 -2.2 870,703 - Shewana3_0750 0.68 +3.0 870,782 - Shewana3_0750 0.73 -1.6 870,872 + Shewana3_0750 0.78 -0.9 870,880 - Shewana3_0750 0.78 -1.9 870,922 + Shewana3_0750 0.81 -1.1 870,978 + Shewana3_0750 0.84 -1.9 871,058 + Shewana3_0750 0.89 -1.1 871,058 + Shewana3_0750 0.89 +0.1 871,226 - -1.8 871,252 + -1.5 871,254 - -1.5 871,632 - Shewana3_0751 0.25 -0.8 871,632 - Shewana3_0751 0.25 +0.2 871,632 - Shewana3_0751 0.25 -0.5 871,826 + Shewana3_0751 0.67 +0.0 871,835 - Shewana3_0751 0.69 +0.1 871,869 - Shewana3_0751 0.76 +0.0 872,076 + +0.6 872,084 - -0.9 872,084 - +0.5 872,241 - +0.6
Or see this region's nucleotide sequence