Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0750

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0748 and Shewana3_0749 are separated by 24 nucleotidesShewana3_0749 and Shewana3_0750 are separated by 66 nucleotidesShewana3_0750 and Shewana3_0751 are separated by 266 nucleotidesShewana3_0751 and Shewana3_0752 are separated by 144 nucleotides Shewana3_0748: Shewana3_0748 - phosphoesterase, PA-phosphatase related (RefSeq), at 868,504 to 869,031 _0748 Shewana3_0749: Shewana3_0749 - hypothetical protein (RefSeq), at 869,056 to 869,490 _0749 Shewana3_0750: Shewana3_0750 - malate dehydrogenase (RefSeq), at 869,557 to 871,245 _0750 Shewana3_0751: Shewana3_0751 - hypothetical protein (RefSeq), at 871,512 to 871,982 _0751 Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413 _0752 Position (kb) 869 870 871 872Strain fitness (log2 ratio) -2 -1 0 1 2 3at 868.627 kb on + strand, within Shewana3_0748at 868.627 kb on + strand, within Shewana3_0748at 868.627 kb on + strand, within Shewana3_0748at 868.689 kb on - strand, within Shewana3_0748at 868.707 kb on + strand, within Shewana3_0748at 868.792 kb on - strand, within Shewana3_0748at 868.956 kb on + strand, within Shewana3_0748at 868.981 kb on + strandat 869.079 kb on - strandat 869.162 kb on - strand, within Shewana3_0749at 869.395 kb on + strand, within Shewana3_0749at 869.473 kb on - strandat 869.484 kb on + strandat 869.642 kb on + strandat 869.661 kb on - strandat 869.843 kb on - strand, within Shewana3_0750at 869.844 kb on - strand, within Shewana3_0750at 869.844 kb on - strand, within Shewana3_0750at 869.929 kb on - strand, within Shewana3_0750at 870.281 kb on + strand, within Shewana3_0750at 870.700 kb on + strand, within Shewana3_0750at 870.703 kb on - strand, within Shewana3_0750at 870.782 kb on - strand, within Shewana3_0750at 870.872 kb on + strand, within Shewana3_0750at 870.880 kb on - strand, within Shewana3_0750at 870.922 kb on + strand, within Shewana3_0750at 870.978 kb on + strand, within Shewana3_0750at 871.058 kb on + strand, within Shewana3_0750at 871.058 kb on + strand, within Shewana3_0750at 871.226 kb on - strandat 871.252 kb on + strandat 871.254 kb on - strandat 871.632 kb on - strand, within Shewana3_0751at 871.632 kb on - strand, within Shewana3_0751at 871.632 kb on - strand, within Shewana3_0751at 871.826 kb on + strand, within Shewana3_0751at 871.835 kb on - strand, within Shewana3_0751at 871.869 kb on - strand, within Shewana3_0751at 872.076 kb on + strandat 872.084 kb on - strandat 872.084 kb on - strandat 872.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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868,627 + Shewana3_0748 0.23 +1.8
868,627 + Shewana3_0748 0.23 -1.1
868,627 + Shewana3_0748 0.23 +0.8
868,689 - Shewana3_0748 0.35 +0.5
868,707 + Shewana3_0748 0.38 -1.4
868,792 - Shewana3_0748 0.55 +0.9
868,956 + Shewana3_0748 0.86 -1.1
868,981 + -0.2
869,079 - +1.0
869,162 - Shewana3_0749 0.24 -1.6
869,395 + Shewana3_0749 0.78 +0.4
869,473 - -0.6
869,484 + +0.6
869,642 + -1.9
869,661 - -0.8
869,843 - Shewana3_0750 0.17 -2.0
869,844 - Shewana3_0750 0.17 -2.3
869,844 - Shewana3_0750 0.17 -1.1
869,929 - Shewana3_0750 0.22 -2.7
870,281 + Shewana3_0750 0.43 -1.2
870,700 + Shewana3_0750 0.68 -2.2
870,703 - Shewana3_0750 0.68 +3.0
870,782 - Shewana3_0750 0.73 -1.6
870,872 + Shewana3_0750 0.78 -0.9
870,880 - Shewana3_0750 0.78 -1.9
870,922 + Shewana3_0750 0.81 -1.1
870,978 + Shewana3_0750 0.84 -1.9
871,058 + Shewana3_0750 0.89 -1.1
871,058 + Shewana3_0750 0.89 +0.1
871,226 - -1.8
871,252 + -1.5
871,254 - -1.5
871,632 - Shewana3_0751 0.25 -0.8
871,632 - Shewana3_0751 0.25 +0.2
871,632 - Shewana3_0751 0.25 -0.5
871,826 + Shewana3_0751 0.67 +0.0
871,835 - Shewana3_0751 0.69 +0.1
871,869 - Shewana3_0751 0.76 +0.0
872,076 + +0.6
872,084 - -0.9
872,084 - +0.5
872,241 - +0.6

Or see this region's nucleotide sequence