Strain Fitness in Shewanella loihica PV-4 around Shew_3822

Experiment: D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate (C)
4,550,348	+		Shew_3821	0.64	+2.1
4,550,367	-		Shew_3821	0.64	+0.6
4,550,377	-		Shew_3821	0.65	-2.6
4,550,418	-		Shew_3821	0.66	+0.6
4,550,475	+		Shew_3821	0.69	+0.3
4,550,493	-		Shew_3821	0.69	-0.3
4,550,510	+		Shew_3821	0.70	+0.3
4,550,575	-		Shew_3821	0.72	+0.0
4,550,615	+		Shew_3821	0.74	+0.1
4,550,636	+		Shew_3821	0.75	-0.5
4,550,666	+		Shew_3821	0.76	+0.4
4,550,693	+		Shew_3821	0.77	-0.2
4,550,703	+		Shew_3821	0.77	-0.5
4,550,712	-		Shew_3821	0.78	+0.7
4,550,752	-		Shew_3821	0.79	-0.8
4,550,754	+		Shew_3821	0.79	+1.7
4,550,755	+		Shew_3821	0.79	+0.3
4,550,762	-		Shew_3821	0.79	+0.6
4,550,818	-		Shew_3821	0.82	+0.9
4,550,829	+		Shew_3821	0.82	+0.9
4,550,829	+		Shew_3821	0.82	+2.4
4,550,829	-		Shew_3821	0.82	-1.1
4,550,829	+		Shew_3821	0.82	+1.2
4,550,829	+		Shew_3821	0.82	-0.5
4,550,829	-		Shew_3821	0.82	-0.1
4,550,830	-		Shew_3821	0.82	-0.5
4,550,837	-		Shew_3821	0.82	+0.5
4,550,837	-		Shew_3821	0.82	-0.5
4,550,837	-		Shew_3821	0.82	-0.6
4,550,841	+		Shew_3821	0.83	+0.5
4,550,849	-		Shew_3821	0.83	-0.1
4,550,859	-		Shew_3821	0.83	+0.1
4,550,889	+		Shew_3821	0.84	+0.3
4,550,996	+		Shew_3821	0.88	+0.1
4,551,015	+		Shew_3821	0.89	+0.1
4,551,015	+		Shew_3821	0.89	+1.2
4,551,015	+		Shew_3821	0.89	+1.6
4,551,015	+		Shew_3821	0.89	+0.3
4,551,015	+		Shew_3821	0.89	+0.8
4,551,023	-		Shew_3821	0.89	+0.8
4,551,023	-		Shew_3821	0.89	+0.2
4,551,023	-		Shew_3821	0.89	-0.2
4,551,023	-		Shew_3821	0.89	-0.4
4,551,023	-		Shew_3821	0.89	-0.1
4,551,023	-		Shew_3821	0.89	-0.1
4,551,023	-		Shew_3821	0.89	-0.1
4,551,023	-		Shew_3821	0.89	+0.7
4,551,023	-		Shew_3821	0.89	+0.6
4,551,023	-		Shew_3821	0.89	+0.3
4,551,023	-		Shew_3821	0.89	+0.0
4,551,023	-		Shew_3821	0.89	+0.6
4,551,024	-		Shew_3821	0.90	+0.2
4,551,071	+				-0.6
4,551,079	+				+0.7
4,551,079	-				-1.6
4,551,093	-				-0.4
4,551,101	+				+1.1
4,551,189	+				+0.3
4,551,189	-				+1.1
4,551,191	+				+0.9
4,551,194	+				+0.0
4,551,195	+				-0.9
4,551,195	+				+0.1
4,551,195	+				-0.3
4,551,195	+				-0.2
4,551,199	+				+0.4
4,551,200	+				+0.5
4,551,200	+				-1.3
4,551,202	-				+0.0
4,551,202	-				-0.7
4,551,203	-				+0.5
4,551,203	+				+0.3
4,551,203	-				+4.0
4,551,203	-				+0.4
4,551,203	-				+0.1
4,551,203	-				+0.9
4,551,205	+				-1.2
4,551,208	-				-0.3
4,551,210	+				-0.4
4,551,213	-				-0.0
4,551,219	+				-0.1
4,551,224	+				-0.9
4,551,232	-				-0.4
4,551,232	-				+0.7
4,551,232	-				+0.0
4,551,243	-				+0.1
4,551,272	+				+1.1
4,551,299	-				+0.1
4,551,299	+				+0.7
4,551,345	+				+0.5
4,551,353	-				-1.9
4,551,354	+				-1.7
4,551,368	+				-1.7
4,551,371	+				-1.4
4,551,420	+		Shew_3822	0.11	-0.9
4,551,444	+		Shew_3822	0.13	-1.3
4,551,451	+		Shew_3822	0.14	-1.9
4,551,478	+		Shew_3822	0.17	+0.1
4,551,479	+		Shew_3822	0.17	-1.1
4,551,492	+		Shew_3822	0.18	-1.3
4,551,492	+		Shew_3822	0.18	-2.8
4,551,542	+		Shew_3822	0.23	-3.2
4,551,542	+		Shew_3822	0.23	-1.5
4,551,542	+		Shew_3822	0.23	-3.1
4,551,542	+		Shew_3822	0.23	-1.3
4,551,542	+		Shew_3822	0.23	-2.9
4,551,542	+		Shew_3822	0.23	-2.5
4,551,542	+		Shew_3822	0.23	-2.3
4,551,542	+		Shew_3822	0.23	-2.8
4,551,552	+		Shew_3822	0.24	-2.6
4,551,552	+		Shew_3822	0.24	-0.5
4,551,552	+		Shew_3822	0.24	-2.4
4,551,552	+		Shew_3822	0.24	-2.7
4,551,552	+		Shew_3822	0.24	+1.1
4,551,552	+		Shew_3822	0.24	-2.9
4,551,557	+		Shew_3822	0.25	+1.1
4,551,557	+		Shew_3822	0.25	-4.5
4,551,557	+		Shew_3822	0.25	-2.9
4,551,557	+		Shew_3822	0.25	-2.5
4,551,614	+		Shew_3822	0.31	-0.7
4,551,740	+		Shew_3822	0.44	-3.3
4,551,872	+		Shew_3822	0.57	-1.7
4,551,884	+		Shew_3822	0.59	-1.7
4,551,884	+		Shew_3822	0.59	-4.4
4,551,884	+		Shew_3822	0.59	-1.1
4,551,916	+		Shew_3822	0.62	-3.3
4,551,951	+		Shew_3822	0.66	-2.3
4,552,107	+		Shew_3822	0.82	-2.1
4,552,180	+		Shew_3822	0.89	-3.5
4,552,186	+		Shew_3822	0.90	-0.5
4,552,196	+				-3.8
4,552,203	+				-2.8
4,552,269	+				-4.6
4,552,312	+				+0.1
4,552,320	+				-0.5
4,552,411	+				+0.2
4,552,411	+				-1.3
4,552,411	+				-1.0
4,552,411	+				+0.2
4,552,411	+				-0.9
4,552,419	-				-0.1
4,552,419	-				-0.4
4,552,419	-				-0.2
4,552,419	-				-0.1
4,552,419	-				+0.8
4,552,419	-				+0.2
4,552,424	-				-0.3
4,552,429	-				-0.2
4,552,447	+				+0.1
4,552,455	-				-0.5
4,552,456	+				-0.4
4,552,458	+				+1.4
4,552,464	-		Shew_3823	0.12	-0.7
4,552,465	-		Shew_3823	0.12	-0.4
4,552,465	-		Shew_3823	0.12	-0.2
4,552,467	+		Shew_3823	0.13	+0.2
4,552,472	+		Shew_3823	0.14	-0.4
4,552,472	+		Shew_3823	0.14	-0.7
4,552,472	+		Shew_3823	0.14	-0.4
4,552,480	-		Shew_3823	0.17	-2.1
4,552,505	+		Shew_3823	0.26	-0.1
4,552,513	-		Shew_3823	0.28	-0.3
4,552,513	-		Shew_3823	0.28	-0.3
4,552,516	+		Shew_3823	0.29	+0.0
4,552,517	+		Shew_3823	0.30	+0.8
4,552,574	-		Shew_3823	0.49	+0.9
4,552,642	+		Shew_3823	0.72	+1.1
4,552,642	+		Shew_3823	0.72	+0.1
4,552,649	-		Shew_3823	0.74	-0.7
4,552,650	-		Shew_3823	0.75	+0.0
4,552,650	-		Shew_3823	0.75	+0.0
4,552,650	-		Shew_3823	0.75	-0.0
4,552,735	+				-0.5
4,552,781	-				+1.4
4,552,814	-				-0.4
4,552,932	-		Shew_3824	0.11	+0.3
4,552,971	-		Shew_3824	0.14	-0.1
4,552,988	-		Shew_3824	0.15	-0.1
4,553,007	+		Shew_3824	0.16	-0.2
4,553,007	+		Shew_3824	0.16	+0.1
4,553,062	+		Shew_3824	0.19	-1.2
4,553,062	+		Shew_3824	0.19	-1.5
4,553,072	+		Shew_3824	0.20	+0.0
4,553,112	+		Shew_3824	0.22	-1.0
4,553,204	+		Shew_3824	0.28	-0.4
4,553,233	-		Shew_3824	0.30	-0.9