Strain Fitness in Shewanella loihica PV-4 around Shew_3138

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3137 and Shew_3138 are separated by 150 nucleotidesShew_3138 and Shew_3139 overlap by 4 nucleotidesShew_3139 and Shew_3140 are separated by 89 nucleotides Shew_3137: Shew_3137 - hypothetical protein (RefSeq), at 3,732,390 to 3,732,950 _3137 Shew_3138: Shew_3138 - hypothetical protein (RefSeq), at 3,733,101 to 3,733,517 _3138 Shew_3139: Shew_3139 - hypothetical protein (RefSeq), at 3,733,514 to 3,733,828 _3139 Shew_3140: Shew_3140 - ABC-2 type transporter (RefSeq), at 3,733,918 to 3,734,706 _3140 Position (kb) 3733 3734Strain fitness (log2 ratio) -1 0 1at 3732.234 kb on + strandat 3732.314 kb on + strandat 3732.586 kb on - strand, within Shew_3137at 3732.688 kb on + strand, within Shew_3137at 3732.815 kb on + strand, within Shew_3137at 3733.795 kb on + strand, within Shew_3139at 3734.184 kb on + strand, within Shew_3140at 3734.235 kb on + strand, within Shew_3140at 3734.242 kb on + strand, within Shew_3140at 3734.243 kb on - strand, within Shew_3140at 3734.417 kb on - strand, within Shew_3140at 3734.451 kb on - strand, within Shew_3140

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,732,234 + -0.9
3,732,314 + +1.2
3,732,586 - Shew_3137 0.35 +0.5
3,732,688 + Shew_3137 0.53 -0.1
3,732,815 + Shew_3137 0.76 +0.7
3,733,795 + Shew_3139 0.89 +1.7
3,734,184 + Shew_3140 0.34 +0.2
3,734,235 + Shew_3140 0.40 -0.8
3,734,242 + Shew_3140 0.41 -1.2
3,734,243 - Shew_3140 0.41 -0.5
3,734,417 - Shew_3140 0.63 +0.1
3,734,451 - Shew_3140 0.68 -1.3

Or see this region's nucleotide sequence