Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3049 and Shew_3050 are separated by 53 nucleotides Shew_3050 and Shew_3051 are separated by 98 nucleotides Shew_3051 and Shew_3052 are separated by 214 nucleotides
Shew_3049: Shew_3049 - major facilitator transporter (RefSeq), at 3,621,793 to 3,623,010
_3049
Shew_3050: Shew_3050 - hypothetical protein (RefSeq), at 3,623,064 to 3,623,420
_3050
Shew_3051: Shew_3051 - cupin 2 domain-containing protein (RefSeq), at 3,623,519 to 3,624,007
_3051
Shew_3052: Shew_3052 - AraC family transcriptional regulator (RefSeq), at 3,624,222 to 3,625,118
_3052
Position (kb) 3623
3624 Strain fitness (log2 ratio) -1
0
1 at 3622.135 kb on + strand, within Shew_3049 at 3622.429 kb on + strand, within Shew_3049 at 3622.766 kb on + strand, within Shew_3049 at 3623.389 kb on + strand at 3623.654 kb on + strand, within Shew_3051 at 3623.737 kb on + strand, within Shew_3051 at 3623.813 kb on + strand, within Shew_3051 at 3623.869 kb on + strand, within Shew_3051 at 3624.040 kb on + strand at 3624.355 kb on + strand, within Shew_3052
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,622,135 + Shew_3049 0.28 +0.6 3,622,429 + Shew_3049 0.52 -1.4 3,622,766 + Shew_3049 0.80 +1.4 3,623,389 + +0.0 3,623,654 + Shew_3051 0.28 +0.4 3,623,737 + Shew_3051 0.45 +1.4 3,623,813 + Shew_3051 0.60 -0.1 3,623,869 + Shew_3051 0.72 -0.9 3,624,040 + +0.2 3,624,355 + Shew_3052 0.15 -0.5
Or see this region's nucleotide sequence