Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1905 and Shew_1906 are separated by 188 nucleotides Shew_1906 and Shew_1907 are separated by 280 nucleotides Shew_1907 and Shew_1908 are separated by 92 nucleotides
Shew_1905: Shew_1905 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,200,934 to 2,202,991
_1905
Shew_1906: Shew_1906 - GCN5-related N-acetyltransferase (RefSeq), at 2,203,180 to 2,203,593
_1906
Shew_1907: Shew_1907 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 2,203,874 to 2,204,302
_1907
Shew_1908: Shew_1908 - hypothetical protein (RefSeq), at 2,204,395 to 2,205,021
_1908
Position (kb)
2203
2204 Strain fitness (log2 ratio)
-1
0
1
2 at 2202.865 kb on + strand at 2202.873 kb on - strand at 2202.902 kb on + strand at 2203.231 kb on - strand, within Shew_1906 at 2203.544 kb on + strand, within Shew_1906 at 2203.552 kb on - strand at 2204.023 kb on + strand, within Shew_1907 at 2204.211 kb on - strand, within Shew_1907 at 2204.211 kb on - strand, within Shew_1907 at 2204.211 kb on - strand, within Shew_1907 at 2204.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,202,865 + +0.1 2,202,873 - +2.0 2,202,902 + -0.9 2,203,231 - Shew_1906 0.12 +1.2 2,203,544 + Shew_1906 0.88 +0.4 2,203,552 - +0.1 2,204,023 + Shew_1907 0.35 -0.0 2,204,211 - Shew_1907 0.79 -0.0 2,204,211 - Shew_1907 0.79 +0.5 2,204,211 - Shew_1907 0.79 +0.8 2,204,447 - +0.2
Or see this region's nucleotide sequence