Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0813 and Shew_0814 are separated by 44 nucleotides Shew_0814 and Shew_0815 are separated by 357 nucleotides Shew_0815 and Shew_0816 are separated by 263 nucleotides Shew_0816 and Shew_0817 are separated by 11 nucleotides
Shew_0813: Shew_0813 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 935,718 to 938,231
_0813
Shew_0814: Shew_0814 - pseudouridine synthase (RefSeq), at 938,276 to 938,824
_0814
Shew_0815: Shew_0815 - Glucosamine-6-phosphate deaminase (EC 3.5.99.6) <small>(from data)</small>, at 939,182 to 939,988
_0815
Shew_0816: Shew_0816 - hypothetical protein (RefSeq), at 940,252 to 940,788
_0816
Shew_0817: Shew_0817 - cupin 2 domain-containing protein (RefSeq), at 940,800 to 941,117
_0817
Position (kb) 939
940 Strain fitness (log2 ratio) -1
0
1 at 938.210 kb on - strand at 938.281 kb on - strand at 938.372 kb on + strand, within Shew_0814 at 938.777 kb on - strand at 939.056 kb on + strand at 939.369 kb on + strand, within Shew_0815 at 939.615 kb on + strand, within Shew_0815 at 939.623 kb on - strand, within Shew_0815 at 939.787 kb on + strand, within Shew_0815 at 939.789 kb on - strand, within Shew_0815 at 939.809 kb on + strand, within Shew_0815 at 940.489 kb on - strand, within Shew_0816 at 940.722 kb on + strand, within Shew_0816 at 940.773 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 938,210 - +0.4 938,281 - -0.6 938,372 + Shew_0814 0.17 -0.1 938,777 - -0.1 939,056 + +0.0 939,369 + Shew_0815 0.23 +0.5 939,615 + Shew_0815 0.54 +0.5 939,623 - Shew_0815 0.55 +0.2 939,787 + Shew_0815 0.75 +0.6 939,789 - Shew_0815 0.75 +0.4 939,809 + Shew_0815 0.78 +0.1 940,489 - Shew_0816 0.44 -0.5 940,722 + Shew_0816 0.88 -0.3 940,773 + +0.0
Or see this region's nucleotide sequence