Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0260 and Shew_0261 are separated by 250 nucleotides Shew_0261 and Shew_0262 are separated by 17 nucleotides Shew_0262 and Shew_0263 are separated by 70 nucleotides Shew_0263 and Shew_0264 overlap by 4 nucleotides
Shew_0260: Shew_0260 - hypothetical protein (RefSeq), at 279,538 to 280,386
_0260
Shew_0261: Shew_0261 - hypothetical protein (RefSeq), at 280,637 to 280,948
_0261
Shew_0262: Shew_0262 - hypothetical protein (RefSeq), at 280,966 to 282,420
_0262
Shew_0263: Shew_0263 - hypothetical protein (RefSeq), at 282,491 to 282,796
_0263
Shew_0264: Shew_0264 - serine/threonine protein kinase (RefSeq), at 282,793 to 283,794
_0264
Position (kb) 280
281
282
283 Strain fitness (log2 ratio) -1
0
1 at 279.972 kb on + strand, within Shew_0260 at 280.112 kb on + strand, within Shew_0260 at 280.308 kb on - strand at 280.380 kb on + strand at 280.388 kb on - strand at 280.743 kb on - strand, within Shew_0261 at 280.950 kb on + strand at 280.958 kb on - strand at 280.964 kb on - strand at 281.023 kb on + strand at 281.092 kb on - strand at 281.163 kb on + strand, within Shew_0262 at 281.243 kb on - strand, within Shew_0262 at 281.416 kb on - strand, within Shew_0262 at 281.534 kb on + strand, within Shew_0262 at 281.537 kb on - strand, within Shew_0262 at 281.552 kb on + strand, within Shew_0262 at 281.560 kb on - strand, within Shew_0262 at 281.613 kb on + strand, within Shew_0262 at 281.923 kb on + strand, within Shew_0262 at 282.023 kb on + strand, within Shew_0262 at 282.296 kb on - strand at 282.601 kb on + strand, within Shew_0263 at 283.020 kb on + strand, within Shew_0264 at 283.087 kb on + strand, within Shew_0264 at 283.157 kb on + strand, within Shew_0264 at 283.157 kb on + strand, within Shew_0264 at 283.165 kb on - strand, within Shew_0264 at 283.347 kb on - strand, within Shew_0264 at 283.356 kb on + strand, within Shew_0264
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 279,972 + Shew_0260 0.51 -0.4 280,112 + Shew_0260 0.68 +0.9 280,308 - -0.8 280,380 + +0.7 280,388 - -0.3 280,743 - Shew_0261 0.34 -0.5 280,950 + +0.3 280,958 - -1.7 280,964 - -0.2 281,023 + -0.1 281,092 - +0.3 281,163 + Shew_0262 0.14 -0.4 281,243 - Shew_0262 0.19 -0.9 281,416 - Shew_0262 0.31 -0.0 281,534 + Shew_0262 0.39 -0.5 281,537 - Shew_0262 0.39 -0.5 281,552 + Shew_0262 0.40 -0.1 281,560 - Shew_0262 0.41 -0.1 281,613 + Shew_0262 0.44 -1.5 281,923 + Shew_0262 0.66 -0.4 282,023 + Shew_0262 0.73 -1.3 282,296 - -0.5 282,601 + Shew_0263 0.36 -0.1 283,020 + Shew_0264 0.23 -0.1 283,087 + Shew_0264 0.29 +0.8 283,157 + Shew_0264 0.36 +0.3 283,157 + Shew_0264 0.36 +0.1 283,165 - Shew_0264 0.37 +0.2 283,347 - Shew_0264 0.55 -0.7 283,356 + Shew_0264 0.56 -0.3
Or see this region's nucleotide sequence