Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0231 and Shew_0232 are separated by 192 nucleotides Shew_0232 and Shew_0233 are separated by 130 nucleotides Shew_0233 and Shew_0234 are separated by 74 nucleotides Shew_0234 and Shew_0235 are separated by 13 nucleotides
Shew_0231: Shew_0231 - hypothetical protein (RefSeq), at 245,669 to 246,940
_0231
Shew_0232: Shew_0232 - hypothetical protein (RefSeq), at 247,133 to 247,528
_0232
Shew_0233: Shew_0233 - hypothetical protein (RefSeq), at 247,659 to 250,001
_0233
Shew_0234: Shew_0234 - hypothetical protein (RefSeq), at 250,076 to 250,435
_0234
Shew_0235: Shew_0235 - isochorismatase hydrolase (RefSeq), at 250,449 to 251,399
_0235
Position (kb) 247
248
249
250
251 Strain fitness (log2 ratio) -1
0
1
2 at 246.690 kb on - strand, within Shew_0231 at 247.136 kb on - strand at 247.235 kb on - strand, within Shew_0232 at 247.264 kb on - strand, within Shew_0232 at 247.415 kb on - strand, within Shew_0232 at 247.415 kb on - strand, within Shew_0232 at 247.420 kb on - strand, within Shew_0232 at 247.587 kb on - strand at 247.685 kb on - strand at 247.745 kb on + strand at 248.066 kb on + strand, within Shew_0233 at 248.076 kb on - strand, within Shew_0233 at 248.083 kb on + strand, within Shew_0233 at 248.100 kb on - strand, within Shew_0233 at 248.296 kb on - strand, within Shew_0233 at 248.504 kb on + strand, within Shew_0233 at 248.504 kb on + strand, within Shew_0233 at 248.542 kb on + strand, within Shew_0233 at 248.806 kb on - strand, within Shew_0233 at 248.862 kb on + strand, within Shew_0233 at 248.862 kb on + strand, within Shew_0233 at 248.870 kb on - strand, within Shew_0233 at 249.280 kb on + strand, within Shew_0233 at 249.635 kb on - strand, within Shew_0233 at 249.635 kb on - strand, within Shew_0233 at 249.818 kb on + strand at 249.982 kb on - strand at 250.144 kb on + strand, within Shew_0234 at 250.151 kb on + strand, within Shew_0234 at 250.179 kb on - strand, within Shew_0234 at 250.224 kb on + strand, within Shew_0234 at 250.481 kb on + strand at 250.659 kb on + strand, within Shew_0235 at 250.659 kb on + strand, within Shew_0235 at 250.662 kb on - strand, within Shew_0235 at 250.667 kb on - strand, within Shew_0235 at 250.667 kb on - strand, within Shew_0235 at 250.936 kb on + strand, within Shew_0235
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 246,690 - Shew_0231 0.80 +1.0 247,136 - +0.1 247,235 - Shew_0232 0.26 +0.5 247,264 - Shew_0232 0.33 +1.4 247,415 - Shew_0232 0.71 +0.2 247,415 - Shew_0232 0.71 -0.2 247,420 - Shew_0232 0.72 +0.2 247,587 - -0.2 247,685 - +0.1 247,745 + -0.1 248,066 + Shew_0233 0.17 +0.6 248,076 - Shew_0233 0.18 -0.9 248,083 + Shew_0233 0.18 -0.1 248,100 - Shew_0233 0.19 -1.0 248,296 - Shew_0233 0.27 +0.2 248,504 + Shew_0233 0.36 +1.1 248,504 + Shew_0233 0.36 -0.1 248,542 + Shew_0233 0.38 -0.1 248,806 - Shew_0233 0.49 +0.7 248,862 + Shew_0233 0.51 -0.3 248,862 + Shew_0233 0.51 +0.4 248,870 - Shew_0233 0.52 -0.0 249,280 + Shew_0233 0.69 +2.0 249,635 - Shew_0233 0.84 -0.3 249,635 - Shew_0233 0.84 +0.1 249,818 + +0.3 249,982 - +0.5 250,144 + Shew_0234 0.19 -0.1 250,151 + Shew_0234 0.21 +0.6 250,179 - Shew_0234 0.29 -0.9 250,224 + Shew_0234 0.41 +0.1 250,481 + -0.4 250,659 + Shew_0235 0.22 -0.5 250,659 + Shew_0235 0.22 +0.1 250,662 - Shew_0235 0.22 -0.1 250,667 - Shew_0235 0.23 +0.6 250,667 - Shew_0235 0.23 -0.6 250,936 + Shew_0235 0.51 -0.5
Or see this region's nucleotide sequence