Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0074 and Shew_0075 overlap by 4 nucleotides Shew_0075 and Shew_0076 are separated by 292 nucleotides Shew_0076 and Shew_0077 are separated by 21 nucleotides Shew_0077 and Shew_0078 are separated by 136 nucleotides
Shew_0074: Shew_0074 - no description, at 88,262 to 88,885
_0074
Shew_0075: Shew_0075 - hypothetical protein (RefSeq), at 88,882 to 89,097
_0075
Shew_0076: Shew_0076 - antibiotic biosynthesis monooxygenase (RefSeq), at 89,390 to 89,677
_0076
Shew_0077: Shew_0077 - GCN5-related N-acetyltransferase (RefSeq), at 89,699 to 90,652
_0077
Shew_0078: Shew_0078 - ribokinase-like domain-containing protein (RefSeq), at 90,789 to 91,649
_0078
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1 at 88.755 kb on + strand, within Shew_0074 at 88.847 kb on + strand at 89.081 kb on - strand at 89.113 kb on - strand at 89.291 kb on + strand at 89.299 kb on - strand at 89.531 kb on + strand, within Shew_0076 at 89.567 kb on + strand, within Shew_0076 at 89.572 kb on + strand, within Shew_0076 at 89.671 kb on + strand at 89.671 kb on + strand at 89.671 kb on + strand at 89.840 kb on - strand, within Shew_0077 at 89.909 kb on + strand, within Shew_0077 at 89.975 kb on + strand, within Shew_0077 at 90.001 kb on + strand, within Shew_0077 at 90.009 kb on - strand, within Shew_0077 at 90.107 kb on + strand, within Shew_0077 at 90.107 kb on + strand, within Shew_0077 at 90.115 kb on - strand, within Shew_0077 at 90.115 kb on - strand, within Shew_0077 at 90.198 kb on + strand, within Shew_0077 at 90.441 kb on + strand, within Shew_0077 at 90.496 kb on - strand, within Shew_0077 at 90.500 kb on + strand, within Shew_0077 at 90.707 kb on - strand at 90.789 kb on - strand at 90.849 kb on + strand at 90.921 kb on + strand, within Shew_0078 at 90.927 kb on + strand, within Shew_0078 at 90.932 kb on + strand, within Shew_0078 at 90.940 kb on - strand, within Shew_0078 at 90.940 kb on - strand, within Shew_0078 at 90.944 kb on + strand, within Shew_0078 at 90.962 kb on - strand, within Shew_0078 at 91.033 kb on + strand, within Shew_0078 at 91.216 kb on - strand, within Shew_0078 at 91.226 kb on - strand, within Shew_0078 at 91.461 kb on - strand, within Shew_0078 at 91.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 88,755 + Shew_0074 0.79 -1.5 88,847 + -0.4 89,081 - -0.0 89,113 - -0.5 89,291 + +1.0 89,299 - +0.6 89,531 + Shew_0076 0.49 +0.0 89,567 + Shew_0076 0.61 +0.2 89,572 + Shew_0076 0.63 +0.5 89,671 + +0.3 89,671 + +0.3 89,671 + -1.1 89,840 - Shew_0077 0.15 +0.2 89,909 + Shew_0077 0.22 -0.0 89,975 + Shew_0077 0.29 -2.2 90,001 + Shew_0077 0.32 -0.2 90,009 - Shew_0077 0.32 -2.2 90,107 + Shew_0077 0.43 -0.3 90,107 + Shew_0077 0.43 -0.3 90,115 - Shew_0077 0.44 +0.9 90,115 - Shew_0077 0.44 -0.4 90,198 + Shew_0077 0.52 -0.2 90,441 + Shew_0077 0.78 -1.2 90,496 - Shew_0077 0.84 -1.0 90,500 + Shew_0077 0.84 +0.0 90,707 - -0.4 90,789 - +0.2 90,849 + -0.8 90,921 + Shew_0078 0.15 +0.3 90,927 + Shew_0078 0.16 +0.1 90,932 + Shew_0078 0.17 -1.0 90,940 - Shew_0078 0.18 +0.1 90,940 - Shew_0078 0.18 +0.3 90,944 + Shew_0078 0.18 +0.1 90,962 - Shew_0078 0.20 +1.1 91,033 + Shew_0078 0.28 +0.2 91,216 - Shew_0078 0.50 +0.0 91,226 - Shew_0078 0.51 -0.0 91,461 - Shew_0078 0.78 +1.1 91,572 - -0.1
Or see this region's nucleotide sequence