Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0349 and BT0350 are separated by 104 nucleotides BT0350 and BT0351 are separated by 189 nucleotides
BT0349: BT0349 - conserved hypothetical protein (NCBI ptt file), at 419,336 to 421,744
BT0349
BT0350: BT0350 - ribulokinase (EC 2.7.1.16) <small>(from data)</small>, at 421,849 to 423,444
BT0350
BT0351: BT0351 - L-arabinose isomerase (NCBI ptt file), at 423,634 to 425,163
BT0351
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 421.059 kb on - strand, within BT0349 at 421.115 kb on - strand, within BT0349 at 421.148 kb on - strand, within BT0349 at 421.249 kb on + strand, within BT0349 at 421.253 kb on - strand, within BT0349 at 421.253 kb on - strand, within BT0349 at 421.254 kb on + strand, within BT0349 at 421.255 kb on - strand, within BT0349 at 421.402 kb on + strand, within BT0349 at 421.403 kb on - strand, within BT0349 at 421.421 kb on + strand, within BT0349 at 421.422 kb on - strand, within BT0349 at 421.446 kb on + strand, within BT0349 at 421.446 kb on + strand, within BT0349 at 421.748 kb on - strand at 421.750 kb on + strand at 421.750 kb on + strand at 421.751 kb on - strand at 421.798 kb on - strand at 421.907 kb on + strand at 421.924 kb on + strand at 421.946 kb on - strand at 421.946 kb on - strand at 421.973 kb on - strand at 422.086 kb on + strand, within BT0350 at 422.234 kb on + strand, within BT0350 at 422.345 kb on + strand, within BT0350 at 422.423 kb on - strand, within BT0350 at 422.615 kb on - strand, within BT0350 at 422.651 kb on - strand, within BT0350 at 422.881 kb on + strand, within BT0350 at 422.881 kb on + strand, within BT0350 at 422.944 kb on + strand, within BT0350 at 422.949 kb on - strand, within BT0350 at 423.014 kb on + strand, within BT0350 at 423.015 kb on - strand, within BT0350 at 423.049 kb on - strand, within BT0350 at 423.059 kb on - strand, within BT0350 at 423.337 kb on - strand at 423.371 kb on - strand at 423.436 kb on + strand at 423.436 kb on + strand at 423.437 kb on - strand at 423.469 kb on + strand at 423.469 kb on + strand at 423.476 kb on - strand at 423.526 kb on + strand at 423.560 kb on + strand at 423.561 kb on - strand at 423.657 kb on + strand at 423.657 kb on + strand at 423.662 kb on + strand at 423.664 kb on + strand at 423.720 kb on + strand at 423.721 kb on - strand at 423.753 kb on - strand at 423.914 kb on - strand, within BT0351 at 423.914 kb on - strand, within BT0351 at 424.017 kb on + strand, within BT0351 at 424.024 kb on - strand, within BT0351 at 424.027 kb on + strand, within BT0351 at 424.028 kb on - strand, within BT0351 at 424.028 kb on - strand, within BT0351 at 424.092 kb on + strand, within BT0351
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 421,059 - BT0349 0.72 +2.1 421,115 - BT0349 0.74 +1.1 421,148 - BT0349 0.75 +1.0 421,249 + BT0349 0.79 -0.8 421,253 - BT0349 0.80 +0.3 421,253 - BT0349 0.80 -1.1 421,254 + BT0349 0.80 -0.5 421,255 - BT0349 0.80 -0.7 421,402 + BT0349 0.86 -2.6 421,403 - BT0349 0.86 +0.9 421,421 + BT0349 0.87 +1.1 421,422 - BT0349 0.87 +1.2 421,446 + BT0349 0.88 -0.3 421,446 + BT0349 0.88 -0.6 421,748 - +0.5 421,750 + -3.2 421,750 + -1.0 421,751 - -1.4 421,798 - -0.5 421,907 + -1.3 421,924 + -1.3 421,946 - -2.3 421,946 - -0.8 421,973 - -2.0 422,086 + BT0350 0.15 -2.6 422,234 + BT0350 0.24 -1.8 422,345 + BT0350 0.31 -2.8 422,423 - BT0350 0.36 -0.8 422,615 - BT0350 0.48 -3.7 422,651 - BT0350 0.50 -1.6 422,881 + BT0350 0.65 -3.2 422,881 + BT0350 0.65 -4.4 422,944 + BT0350 0.69 -1.8 422,949 - BT0350 0.69 -3.9 423,014 + BT0350 0.73 -2.7 423,015 - BT0350 0.73 -3.7 423,049 - BT0350 0.75 -3.8 423,059 - BT0350 0.76 -2.1 423,337 - -1.6 423,371 - -3.7 423,436 + -4.3 423,436 + -2.3 423,437 - -1.1 423,469 + -2.6 423,469 + -2.3 423,476 - -1.8 423,526 + -3.3 423,560 + -3.2 423,561 - -0.4 423,657 + -1.9 423,657 + -2.4 423,662 + -0.9 423,664 + -2.3 423,720 + -1.3 423,721 - -2.3 423,753 - -1.7 423,914 - BT0351 0.18 -0.9 423,914 - BT0351 0.18 -1.3 424,017 + BT0351 0.25 -2.6 424,024 - BT0351 0.25 -2.1 424,027 + BT0351 0.26 -2.3 424,028 - BT0351 0.26 -2.1 424,028 - BT0351 0.26 -1.7 424,092 + BT0351 0.30 -2.6
Or see this region's nucleotide sequence