Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23925

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23920 and RS_RS23925 are separated by 18 nucleotidesRS_RS23925 and RS_RS23930 are separated by 44 nucleotides RS_RS23920: RS_RS23920 - chemotaxis protein CheA, at 1,771,640 to 1,773,820 _RS23920 RS_RS23925: RS_RS23925 - response regulator, at 1,773,839 to 1,774,252 _RS23925 RS_RS23930: RS_RS23930 - motility protein MotB, at 1,774,297 to 1,775,241 _RS23930 Position (kb) 1773 1774 1775Strain fitness (log2 ratio) -1 0 1at 1773.468 kb on + strand, within RS_RS23920at 1773.468 kb on + strand, within RS_RS23920at 1773.469 kb on - strand, within RS_RS23920at 1773.469 kb on - strand, within RS_RS23920at 1773.469 kb on - strand, within RS_RS23920at 1773.469 kb on - strand, within RS_RS23920at 1773.469 kb on - strand, within RS_RS23920at 1773.841 kb on - strandat 1774.021 kb on - strand, within RS_RS23925at 1774.287 kb on - strandat 1774.287 kb on - strandat 1774.715 kb on + strand, within RS_RS23930at 1774.715 kb on + strand, within RS_RS23930at 1774.716 kb on - strand, within RS_RS23930at 1774.716 kb on - strand, within RS_RS23930at 1774.911 kb on + strand, within RS_RS23930at 1774.911 kb on + strand, within RS_RS23930at 1775.058 kb on - strand, within RS_RS23930at 1775.058 kb on - strand, within RS_RS23930at 1775.058 kb on - strand, within RS_RS23930

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,773,468 + RS_RS23920 0.84 -0.4
1,773,468 + RS_RS23920 0.84 +0.2
1,773,469 - RS_RS23920 0.84 -0.5
1,773,469 - RS_RS23920 0.84 +0.1
1,773,469 - RS_RS23920 0.84 -0.7
1,773,469 - RS_RS23920 0.84 +0.0
1,773,469 - RS_RS23920 0.84 +0.5
1,773,841 - +0.3
1,774,021 - RS_RS23925 0.44 -0.1
1,774,287 - -1.0
1,774,287 - +0.5
1,774,715 + RS_RS23930 0.44 +0.2
1,774,715 + RS_RS23930 0.44 +0.7
1,774,716 - RS_RS23930 0.44 +0.1
1,774,716 - RS_RS23930 0.44 +0.9
1,774,911 + RS_RS23930 0.65 -0.4
1,774,911 + RS_RS23930 0.65 -0.9
1,775,058 - RS_RS23930 0.81 -0.3
1,775,058 - RS_RS23930 0.81 -0.9
1,775,058 - RS_RS23930 0.81 -1.0

Or see this region's nucleotide sequence