Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS21380 and RS_RS21385 are separated by 90 nucleotides RS_RS21385 and RS_RS21390 overlap by 4 nucleotides RS_RS21390 and RS_RS21395 are separated by 15 nucleotides
RS_RS21380: RS_RS21380 - LysR family transcriptional regulator, at 1,124,547 to 1,125,473
_RS21380
RS_RS21385: RS_RS21385 - oxidoreductase, at 1,125,564 to 1,126,430
_RS21385
RS_RS21390: RS_RS21390 - class II aldolase family protein, at 1,126,427 to 1,127,095
_RS21390
RS_RS21395: RS_RS21395 - 2-hydroxymuconic semialdehyde dehydrogenase, at 1,127,111 to 1,128,577
_RS21395
Position (kb) 1125
1126
1127 Strain fitness (log2 ratio) -1
0
1 at 1124.844 kb on - strand, within RS_RS21380 at 1124.935 kb on + strand, within RS_RS21380 at 1124.936 kb on - strand, within RS_RS21380 at 1125.124 kb on + strand, within RS_RS21380 at 1125.589 kb on - strand at 1125.589 kb on - strand at 1125.631 kb on - strand at 1125.684 kb on + strand, within RS_RS21385 at 1125.684 kb on + strand, within RS_RS21385 at 1126.294 kb on - strand, within RS_RS21385 at 1126.344 kb on + strand at 1126.344 kb on + strand at 1126.380 kb on + strand at 1126.427 kb on - strand at 1126.656 kb on - strand, within RS_RS21390 at 1126.932 kb on - strand, within RS_RS21390 at 1127.186 kb on - strand at 1127.315 kb on + strand, within RS_RS21395 at 1127.315 kb on + strand, within RS_RS21395 at 1127.315 kb on + strand, within RS_RS21395 at 1127.413 kb on + strand, within RS_RS21395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,124,844 - RS_RS21380 0.32 +0.2 1,124,935 + RS_RS21380 0.42 +0.5 1,124,936 - RS_RS21380 0.42 +0.1 1,125,124 + RS_RS21380 0.62 -0.2 1,125,589 - -0.2 1,125,589 - +1.4 1,125,631 - +0.5 1,125,684 + RS_RS21385 0.14 -0.9 1,125,684 + RS_RS21385 0.14 +0.3 1,126,294 - RS_RS21385 0.84 -1.5 1,126,344 + -0.0 1,126,344 + +0.1 1,126,380 + +0.2 1,126,427 - +0.4 1,126,656 - RS_RS21390 0.34 -0.0 1,126,932 - RS_RS21390 0.75 -1.6 1,127,186 - +0.4 1,127,315 + RS_RS21395 0.14 +0.2 1,127,315 + RS_RS21395 0.14 +0.9 1,127,315 + RS_RS21395 0.14 -0.6 1,127,413 + RS_RS21395 0.21 +0.7
Or see this region's nucleotide sequence